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[ Source: yanosim  ]

Package: yanosim (0.1-3 and others)

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read simulator nanopore DRS datasets

Yanosim has three options:

1. yanosim model:

   Creates an model of mismatches, insertions and deletions
   based on an alignment of nanopore DRS reads to a
   reference. Reads should be aligned to a transcriptome
   i.e. without spliced alignment, using minimap2. They
   should have the cs tag.
2. yanosim quantify:
   Quantify the number of reads mapping to each
   transcript in a reference, so that the right number
   of reads can be simulated.
3. yanosim simulate:
   Given a model created using yanosim model, and
   per-transcript read counts created using yanosim
   simulate, simulate error-prone long-reads from the
   given fasta file.

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Download yanosim

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha (unofficial port) 0.1-2 9.1 kB45.0 kB [list of files]
amd64 0.1-3 9.1 kB45.0 kB [list of files]
arm64 0.1-3 9.1 kB45.0 kB [list of files]
armel 0.1-3 9.1 kB45.0 kB [list of files]
armhf 0.1-3 9.1 kB45.0 kB [list of files]
hppa (unofficial port) 0.1-2 9.1 kB45.0 kB [list of files]
i386 0.1-3 9.1 kB45.0 kB [list of files]
m68k (unofficial port) 0.1-3 9.1 kB45.0 kB [list of files]
mips64el 0.1-3 9.1 kB45.0 kB [list of files]
mipsel 0.1-3 9.1 kB45.0 kB [list of files]
ppc64 (unofficial port) 0.1-2 9.1 kB45.0 kB [list of files]
ppc64el 0.1-3 9.1 kB45.0 kB [list of files]
riscv64 (unofficial port) 0.1-3 9.1 kB45.0 kB [list of files]
sh4 (unofficial port) 0.1-3 9.1 kB45.0 kB [list of files]
sparc64 (unofficial port) 0.1-2 9.1 kB45.0 kB [list of files]
x32 (unofficial port) 0.1-3 9.1 kB45.0 kB [list of files]