[ Source: vcfanno ]
Package: vcfanno (0.3.5+ds-2)
Links for vcfanno
Debian Resources:
Download Source Package vcfanno:
Maintainers:
External Resources:
- Homepage [github.com]
Similar packages:
annotate a VCF with other VCFs/BEDs/tabixed files
Vcfanno allows you to quickly annotate your VCF with any number of INFO fields from any number of VCFs or BED files. It uses a simple conf file to allow the user to specify the source annotation files and fields and how they will be added to the info of the query VCF.
* For VCF, values are pulled by name from the INFO field with special
cases of ID and FILTER to pull from those VCF columns.
* For BED, values are pulled from (1-based) column number.
* For BAM, depth (count), "mapq" and "seq" are currently supported.
Vcfanno is written in go and it supports custom user-scripts written in Lua. It can annotate more than 8000 variants per second with 34 annotations from 9 files on a modest laptop and over 30K variants per second using 12 processes on a server.
Other Packages Related to vcfanno
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- dep: libc6 (>= 2.34) [not alpha]
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
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- dep: libc6.1 (>= 2.34) [alpha]
- GNU C Library: Shared libraries
also a virtual package provided by libc6.1-udeb
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- dep: libgcc-s1 (>= 3.3.1) [ppc64, x32]
- GCC support library
- dep: libgcc-s1 (>= 3.4) [alpha, sparc64]
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- dep: libgo22 [alpha, ppc64, sparc64, x32]
- Runtime library for GNU Go applications
Download vcfanno
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| alpha (unofficial port) | 625.6 kB | 3,140.0 kB | [list of files] |
| amd64 | 2,249.3 kB | 6,683.0 kB | [list of files] |
| arm64 | 1,926.1 kB | 6,367.0 kB | [list of files] |
| armel | 1,923.4 kB | 6,531.0 kB | [list of files] |
| armhf | 1,915.6 kB | 6,491.0 kB | [list of files] |
| i386 | 2,071.5 kB | 6,520.0 kB | [list of files] |
| mips64el | 1,736.8 kB | 7,410.0 kB | [list of files] |
| ppc64 (unofficial port) | 727.7 kB | 4,594.0 kB | [list of files] |
| ppc64el | 1,915.0 kB | 6,558.0 kB | [list of files] |
| riscv64 | 1,945.1 kB | 6,439.0 kB | [list of files] |
| s390x | 2,058.2 kB | 7,111.0 kB | [list of files] |
| sparc64 (unofficial port) | 606.9 kB | 4,930.0 kB | [list of files] |
| x32 (unofficial port) | 647.4 kB | 2,660.0 kB | [list of files] |