Package: varscan (2.4.3+dfsg-3) [non-free]
Links for varscan
Download Source Package varscan:
- Homepage [dkoboldt.github.io]
variant detection in next-generation sequencing data
Variant detection in massively parallel sequencing. For one sample, calls SNPs, indels, and consensus genotypes. For tumor-normal pairs, further classifies each variant as Germline, Somatic, or LOH, and also detects somatic copy number changes.