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Package: unikmer (0.18.1-1 and others)

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Toolkit for nucleic acid k-mer analysis

unikmer is a golang package and a toolkit for nucleic acid k-mer analysis, providing functions including set operation k-mers optional with TaxIDs but without count information.

K-mers are either encoded (k<=32) or hashed (arbitrary k) into uint64, and serialized in binary file with extension .unik.

TaxIDs can be assigned when counting k-mers from genome sequences, and LCA (Lowest Common Ancestor) is computed during set opertions including computing union, intersecton, set difference, unique and repeated k-mers.

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Download for all available architectures
Architecture Version Package Size Installed Size Files
amd64 0.18.1-1+b1 2,358.5 kB7,828.0 kB [list of files]
arm64 0.18.1-1+b1 2,008.5 kB7,232.0 kB [list of files]
armel 0.18.1-1+b1 2,042.6 kB6,612.0 kB [list of files]
armhf 0.18.1-1+b1 2,035.1 kB6,612.0 kB [list of files]
i386 0.18.1-1+b1 2,224.0 kB6,643.0 kB [list of files]
mips64el 0.18.1-1+b1 1,866.1 kB7,914.0 kB [list of files]
mipsel 0.18.1-1+b1 1,897.8 kB7,377.0 kB [list of files]
ppc64el 0.18.1-1+b1 1,958.9 kB7,232.0 kB [list of files]
riscv64 (unofficial port) 0.18.1-1+b1 2,168.6 kB7,617.0 kB [list of files]
s390x 0.18.1-1+b1 2,142.9 kB7,747.0 kB [list of files]