Package: tree-ppuzzle (5.3~rc16+dfsg-14 and others)

[ Source: tree-puzzle  ]

Parallelized reconstruction of phylogenetic trees by maximum likelihood

TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment.

This is the parallelized version of tree-puzzle.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, use::comparing, Supports Format: Plain Text, Works with: Need an extra tag

Other Packages Related to tree-ppuzzle

• dep: libc6 (>= 2.38) [not alpha, i386, ia64, loong64, sh4]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.42) [i386, loong64, sh4]

• dep: libc6.1 (>= 2.37) [ia64]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.38) [alpha]

• dep: libmpich12 [armhf, hppa, i386, m68k, sh4]

  Shared libraries for MPICH

  dep: libmpich12 (>= 4.2.0) [x32]

• dep: libopenmpi3t64 (>= 4.1.6) [ia64]

  high performance message passing library -- shared library

• dep: libopenmpi40 (>= 5.0.9) [not armhf, hppa, i386, ia64, m68k, sh4, x32]

  high performance message passing library -- shared library

• dep: libsprng2

  SPRNG Scalable Parallel RNG library -- library package

• dep: mpi-default-bin [not ia64]

  Standard MPI runtime programs (metapackage)

• dep: openmpi-bin [ia64]

  high performance message passing library -- binaries

• rec: tree-puzzle-doc

  Reconstruction of phylogenetic trees by maximum likelihood (doc)

• sug: phylip

  package of programs for inferring phylogenies

• sug: treetool

  Package not available

Download tree-ppuzzle

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	5.3~rc16+dfsg-14	182.5 kB	556.0 kB	[list of files]
amd64	5.3~rc16+dfsg-14	183.5 kB	436.0 kB	[list of files]
arm64	5.3~rc16+dfsg-14+b1	165.3 kB	429.0 kB	[list of files]
armhf	5.3~rc16+dfsg-14	167.7 kB	363.0 kB	[list of files]
hppa (unofficial port)	5.3~rc16+dfsg-14	172.5 kB	432.0 kB	[list of files]
i386	5.3~rc16+dfsg-14	197.8 kB	543.0 kB	[list of files]
ia64 (unofficial port)	5.3~rc16+dfsg-9+b1	233.7 kB	860.0 kB	[list of files]
loong64	5.3~rc16+dfsg-14	176.7 kB	491.0 kB	[list of files]
m68k (unofficial port)	5.3~rc16+dfsg-14	169.1 kB	459.0 kB	[list of files]
ppc64 (unofficial port)	5.3~rc16+dfsg-14	196.3 kB	556.0 kB	[list of files]
ppc64el	5.3~rc16+dfsg-14	196.1 kB	556.0 kB	[list of files]
riscv64	5.3~rc16+dfsg-14	183.3 kB	372.0 kB	[list of files]
s390x	5.3~rc16+dfsg-14	196.9 kB	491.0 kB	[list of files]
sh4 (unofficial port)	5.3~rc16+dfsg-14	203.5 kB	428.0 kB	[list of files]
sparc64 (unofficial port)	5.3~rc16+dfsg-14	168.1 kB	1,070.0 kB	[list of files]
x32 (unofficial port)	5.3~rc16+dfsg-14	178.6 kB	415.0 kB	[list of files]