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[ Source: t-coffee  ]

Package: t-coffee (

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Multiple Sequence Alignment

T-Coffee is a multiple sequence alignment package. Given a set of sequences (Proteins or DNA), T-Coffee generates a multiple sequence alignment. Version 2.00 and higher can mix sequences and structures.

T-Coffee allows the combination of a collection of multiple/pairwise, global or local alignments into a single model. It can also estimate the level of consistency of each position within the new alignment with the rest of the alignments. See the pre-print for more information

T-Coffee has a special called M-Coffee that makes it possible to combine the output of many multiple sequence alignment packages. In its published version, it uses MUSCLE, PROBCONS, POA, DiAlign-TS, MAFFT, Clustal W, PCMA and T-Coffee. A special version has been made for Debian, DM-Coffee, that uses only free software by replacing Clustal W by Kalign. Using the 8 Methods of M-Coffee can sometimes be a bit heavy. You can use a subset of your favorite methods if you prefer.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, use::comparing, Supports Format: Need an extra tag, works-with-format::plaintext, works-with::TODO

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Download t-coffee

Download for all available architectures
Architecture Package Size Installed Size Files
alpha (unofficial port) 1,015.2 kB3,367.0 kB [list of files]
amd64 979.6 kB2,689.0 kB [list of files]
arm64 879.1 kB2,589.0 kB [list of files]
armel 829.9 kB2,504.0 kB [list of files]
armhf 853.7 kB1,912.0 kB [list of files]
hppa (unofficial port) 910.4 kB2,727.0 kB [list of files]
i386 998.4 kB3,032.0 kB [list of files]
ia64 (unofficial port) 1,214.0 kB5,416.0 kB [list of files]
m68k (unofficial port) 886.7 kB2,820.0 kB [list of files]
mips64el 950.4 kB3,335.0 kB [list of files]
mipsel 935.9 kB3,234.0 kB [list of files]
ppc64 (unofficial port) 996.1 kB3,405.0 kB [list of files]
ppc64el 1,031.5 kB3,341.0 kB [list of files]
riscv64 (unofficial port) 939.4 kB2,222.0 kB [list of files]
s390x 898.0 kB2,949.0 kB [list of files]
sh4 (unofficial port) 1,078.5 kB2,557.0 kB [list of files]
sparc64 (unofficial port) 830.2 kB2,681.0 kB [list of files]
x32 (unofficial port) 979.1 kB2,676.0 kB [list of files]