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[ Source: spaln  ]

Package: spaln (2.4.1+dfsg-3 and others)

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splicing-aware transcript-alignment to genomic DNA

Spaln (space-efficient spliced alignment) is a stand-alone program that maps and aligns a set of cDNA or protein sequences onto a whole genomic sequence in a single job. It also performs spliced or ordinary alignment after rapid similarity search against a protein sequence database, if a genomic segment or an amino acid sequence is given as a query.

spaln supports a combination of protein sequence database and a given genomic segment and performs rapid similarity searches and (semi-)global alignments of a set of protein sequence queries against a protein sequence database. Spaln adopts multi-phase heuristics that makes it possible to perform the job on a conventional personal computer.

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Download spaln

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha (unofficial port) 2.4.1+dfsg-3 363.8 kB977.0 kB [list of files]
amd64 2.4.1+dfsg-3 345.1 kB855.0 kB [list of files]
arm64 2.4.1+dfsg-3 311.5 kB775.0 kB [list of files]
armel 2.4.1+dfsg-3 296.6 kB781.0 kB [list of files]
armhf 2.4.1+dfsg-3 303.3 kB589.0 kB [list of files]
hppa (unofficial port) 2.4.1+dfsg-3 339.5 kB834.0 kB [list of files]
i386 2.4.1+dfsg-3 349.5 kB881.0 kB [list of files]
m68k (unofficial port) 2.4.1+dfsg-3 317.0 kB817.0 kB [list of files]
mips64el 2.4.1+dfsg-3 330.2 kB955.0 kB [list of files]
mipsel 2.4.1+dfsg-3 323.5 kB895.0 kB [list of files]
ppc64 (unofficial port) 2.4.1+dfsg-3 351.9 kB1,120.0 kB [list of files]
ppc64el 2.4.1+dfsg-3 360.1 kB1,120.0 kB [list of files]
riscv64 (unofficial port) 2.4.0+dfsg-2 312.2 kB625.0 kB [list of files]
s390x 2.4.1+dfsg-3 349.1 kB1,003.0 kB [list of files]
sh4 (unofficial port) 2.4.1+dfsg-3 382.3 kB743.0 kB [list of files]
sparc64 (unofficial port) 2.4.1+dfsg-3 314.9 kB863.0 kB [list of files]
x32 (unofficial port) 2.4.1+dfsg-3 343.2 kB826.0 kB [list of files]