Package: skewer (0.2.2-6 and others)

[ Source: skewer  ]

post-processing of high-throughput DNA sequence reads

skewer implements the bit-masked k-difference matching algorithm dedicated to the task of adapter trimming and it is specially designed for processing next-generation sequencing (NGS) paired-end sequences.

Features

 * Detection and removal of adapter sequences
 * Insertion and deletion allowed in pattern matching
 * Targeted at Single End, Paired End (PE), and Long Mate Pair (LMP) reads
 * Demultiplexing of barcoded sequencing runs
 * Multi-threading support
 * Trimming based on phred quality scores
 * IUPAC characters for barcodes and adapters
 * Compressed input and output support

Other Packages Related to skewer

• dep: libc6 (>= 2.17) [hppa, m68k, ppc64, sparc64, x32]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.32) [sh4]

  dep: libc6 (>= 2.34) [amd64, armhf, i386, ppc64el, riscv64, s390x]

  dep: libc6 (>= 2.38) [arm64]

  dep: libc6 (>= 2.42) [loong64]

• dep: libc6.1 (>= 2.17) [alpha]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.32) [ia64]

• dep: libgcc-s1 (>= 3.0) [not armhf, hppa, i386, ia64, m68k]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armhf]

  dep: libgcc-s1 (>= 4.2) [i386, ia64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support library

• dep: libstdc++6 (>= 11) [not arm64, loong64]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 5.2) [arm64, loong64]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

Download skewer

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	0.2.2-6	87.6 kB	227.0 kB	[list of files]
amd64	0.2.2-6+b1	86.4 kB	216.0 kB	[list of files]
arm64	0.2.2-6+b3	78.0 kB	236.0 kB	[list of files]
armhf	0.2.2-6+b1	75.5 kB	171.0 kB	[list of files]
hppa (unofficial port)	0.2.2-6	83.6 kB	195.0 kB	[list of files]
i386	0.2.2-6+b1	90.2 kB	231.0 kB	[list of files]
ia64 (unofficial port)	0.2.2-6	107.3 kB	387.0 kB	[list of files]
loong64	0.2.2-6+b1	80.6 kB	235.0 kB	[list of files]
m68k (unofficial port)	0.2.2-6	83.4 kB	209.0 kB	[list of files]
ppc64 (unofficial port)	0.2.2-6	83.7 kB	235.0 kB	[list of files]
ppc64el	0.2.2-6+b1	84.9 kB	236.0 kB	[list of files]
riscv64	0.2.2-6+b1	80.3 kB	159.0 kB	[list of files]
s390x	0.2.2-6+b1	76.0 kB	199.0 kB	[list of files]
sh4 (unofficial port)	0.2.2-6	98.1 kB	190.0 kB	[list of files]
sparc64 (unofficial port)	0.2.2-6	75.2 kB	197.0 kB	[list of files]
x32 (unofficial port)	0.2.2-6	86.1 kB	201.0 kB	[list of files]