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[ Source: shovill  ]

Package: shovill (1.1.0-4 and others)

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Assemble bacterial isolate genomes from Illumina paired-end reads

Shovill is a pipeline which uses SPAdes at its core, but alters the steps before and after the primary assembly step to get similar results in less time. Shovill also supports other assemblers like SKESA, Velvet and Megahit, so you can take advantage of the pre- and post-processing the Shovill provides with those too.

Other Packages Related to shovill

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Download shovill

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha (unofficial port) 1.1.0-2 12.2 kB39.0 kB [list of files]
amd64 1.1.0-4 12.4 kB39.0 kB [list of files]
hppa (unofficial port) 1.1.0-2 12.2 kB39.0 kB [list of files]
m68k (unofficial port) 1.1.0-2 12.2 kB39.0 kB [list of files]
ppc64 (unofficial port) 1.1.0-2 12.2 kB39.0 kB [list of files]
riscv64 (unofficial port) 1.1.0-2 12.2 kB39.0 kB [list of files]
sh4 (unofficial port) 1.1.0-2 12.2 kB39.0 kB [list of files]
sparc64 (unofficial port) 1.1.0-2 12.2 kB39.0 kB [list of files]
x32 (unofficial port) 1.1.0-2 12.2 kB39.0 kB [list of files]