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[ Source: sga  ]

Package: sga (0.10.15-4 and others)

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de novo genome assembler that uses string graphs

The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads.

SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers' string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads.

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Download sga

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha (unofficial port) 0.10.14-2 952.3 kB3,487.0 kB [list of files]
amd64 0.10.15-4 954.4 kB2,875.0 kB [list of files]
arm64 0.10.15-4 670.7 kB2,011.0 kB [list of files]
hppa (unofficial port) 0.10.14-2 977.9 kB2,993.0 kB [list of files]
m68k (unofficial port) 0.10.15-4 878.3 kB3,414.0 kB [list of files]
mips64el 0.10.15-4 823.3 kB3,391.0 kB [list of files]
powerpcspe (unofficial port) 0.10.15-2 751.7 kB2,366.0 kB [list of files]
ppc64 (unofficial port) 0.10.14-2 735.4 kB2,620.0 kB [list of files]
ppc64el 0.10.15-4 789.6 kB2,623.0 kB [list of files]
riscv64 (unofficial port) 0.10.15-4 714.6 kB1,684.0 kB [list of files]
sh4 (unofficial port) 0.10.15-4 1,052.2 kB2,782.0 kB [list of files]
sparc64 (unofficial port) 0.10.14-2 770.0 kB2,627.0 kB [list of files]
x32 (unofficial port) 0.10.15-2 953.2 kB2,818.0 kB [list of files]