Package: r-bioc-degnorm (1.16.0+ds-2 and others)

[ Source: r-bioc-degnorm  ]

DegNorm: degradation normalization for RNA-seq data

This package performs degradation normalization in bulk RNA-seq data to improve differential expression analysis accuracy.

Other Packages Related to r-bioc-degnorm

• dep: libblas3

  Basic Linear Algebra Reference implementations, shared library

  or libblas.so.3

  virtual package provided by libatlas3-base, libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libc6 (>= 2.27) [riscv64]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.29) [not alpha, ia64, loong64, riscv64, sh4]

  dep: libc6 (>= 2.37) [sh4]

  dep: libc6 (>= 2.40) [loong64]

• dep: libc6.1 (>= 2.29) [alpha]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgcc-s1 (>= 3.0) [not hppa, ia64, sh4]

  GCC support library

  dep: libgcc-s1 (>= 3.3.4) [sh4]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support library

• dep: libgomp1 (>= 4.9)

  GCC OpenMP (GOMP) support library

• dep: libstdc++6 (>= 13.1) [hppa, ia64, sh4]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 14) [not hppa, ia64, sh4, x32]

  dep: libstdc++6 (>= 9) [x32]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: r-api-4.0

  virtual package provided by r-base-core

• dep: r-api-bioc-3.16 [x32]

  Package not available

• dep: r-api-bioc-3.18 [hppa, ia64, sh4]

  Package not available

• dep: r-api-bioc-3.20 [not hppa, ia64, sh4, x32]

  virtual package provided by r-bioc-biocgenerics

• dep: r-base-core (>= 4.2.2.20221110-1) [x32]

  GNU R core of statistical computation and graphics system

• dep: r-bioc-genomicalignments

  BioConductor representation and manipulation of short genomic alignments

• dep: r-bioc-genomicfeatures

  GNU R tools for making and manipulating transcript centric annotations

• dep: r-bioc-genomicranges

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-iranges

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-rsamtools (>= 1.31.2)

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

• dep: r-bioc-s4vectors

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-txdbmaker [not hppa, ia64, sh4, x32]

  Tools for making TxDb objects from genomic annotations

• dep: r-cran-data.table

  GNU R extension of Data.frame

• dep: r-cran-doparallel

  GNU R foreach parallel adaptor for the parallel package

• dep: r-cran-foreach

  GNU R foreach looping support

• dep: r-cran-ggplot2

  implementation of the Grammar of Graphics

• dep: r-cran-heatmaply

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• dep: r-cran-plotly

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• dep: r-cran-plyr

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• dep: r-cran-rcpp (>= 1.0.2)

  GNU R package for Seamless R and C++ Integration

• dep: r-cran-rcpparmadillo

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• dep: r-cran-viridis

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• sug: r-cran-formatr

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• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

Download r-bioc-degnorm

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.16.0+ds-2	1,481.1 kB	3,206.0 kB	[list of files]
amd64	1.16.0+ds-2	1,484.6 kB	3,129.0 kB	[list of files]
arm64	1.16.0+ds-2	1,476.6 kB	3,141.0 kB	[list of files]
hppa (unofficial port)	1.12.0+ds-1	1,483.8 kB	3,134.0 kB	[list of files]
ia64 (unofficial port)	1.12.0+ds-1	1,497.1 kB	3,290.0 kB	[list of files]
loong64 (unofficial port)	1.16.0+ds-2	1,480.3 kB	3,141.0 kB	[list of files]
mips64el	1.16.0+ds-2	1,477.8 kB	3,149.0 kB	[list of files]
ppc64 (unofficial port)	1.16.0+ds-2	1,485.1 kB	3,208.0 kB	[list of files]
ppc64el	1.16.0+ds-2	1,484.1 kB	3,205.0 kB	[list of files]
riscv64	1.16.0+ds-2	1,485.7 kB	3,093.0 kB	[list of files]
s390x	1.16.0+ds-2	1,485.0 kB	3,133.0 kB	[list of files]
sh4 (unofficial port)	1.12.0+ds-1	1,496.8 kB	3,139.0 kB	[list of files]
x32 (unofficial port)	1.8.0+ds-1	1,482.9 kB	3,107.0 kB	[list of files]