all options
bullseye  ] [  sid  ]
[ Source: r-bioc-dada2  ]

Package: r-bioc-dada2 (1.18.0+dfsg-1)

Links for r-bioc-dada2


Debian Resources:

Download Source Package r-bioc-dada2:


External Resources:

Similar packages:

sample inference from amplicon sequencing data

The dada2 package contributes to software workflows to interpret sequencing data from microbiota - the relative abundance of bacterial and/or yeast, typically measured in the gut. It infers exact amplicon sequence variants (ASVs) from high-throughput amplicon sequencing data, replacing the coarser and less accurate OTU clustering approach. The dada2 pipeline takes as input demultiplexed fastq files, and outputs the sequence variants and their sample-wise abundances after removing substitution and chimera errors. Taxonomic classification is available via a native implementation of the RDP naive Bayesian classifier, and species-level assignment to 16S rRNA gene fragments by exact matching.

Other Packages Related to r-bioc-dada2

  • depends
  • recommends
  • suggests
  • enhances

Download r-bioc-dada2

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 1,838.1 kB2,182.0 kB [list of files]
x32 (unofficial port) 1,836.6 kB2,153.0 kB [list of files]