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[ Source: qcumber  ]

Package: qcumber (2.3.0-2)

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quality control of genomic sequences

QCPipeline is a tool for quality control. The workflow is as follows:

 1. Quality control with FastQC
 2. Trim Reads with Trimmomatic
 3. Quality control of trimmed reads with FastQC
 4. Map reads against reference using bowtie2
 5. Classify reads with Kraken

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Download qcumber

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Architecture Package Size Installed Size Files
all 49.3 kB236.0 kB [list of files]