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[ Source: pairtools  ]

Package: python3-pairtools (0.3.0-2 and others)

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Framework to process sequencing data from a Hi-C experiment

Simple and fast command-line framework to process sequencing data from a Hi-C experiment.

Process pair-end sequence alignments and perform the following operations:

  - Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
    sequences of Hi-C DNA molecules
  - Sort .pairs files for downstream analyses
  - Detect, tag and remove PCR/optical duplicates
  - Generate extensive statistics of Hi-C datasets
  - Select Hi-C pairs given flexibly defined criteria
  - Restore .sam alignments from Hi-C pairs

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Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha (unofficial port) 0.3.0-2+b2 113.6 kB440.0 kB [list of files]
amd64 0.3.0-2+b2 121.3 kB440.0 kB [list of files]
arm64 0.3.0-2+b2 110.5 kB407.0 kB [list of files]
armel 0.3.0-2+b2 109.3 kB394.0 kB [list of files]
armhf 0.3.0-2+b2 109.4 kB342.0 kB [list of files]
hppa (unofficial port) 0.3.0-2+b2 115.4 kB429.0 kB [list of files]
i386 0.3.0-2+b2 119.7 kB426.0 kB [list of files]
m68k (unofficial port) 0.3.0-2+b2 107.5 kB396.0 kB [list of files]
mips64el 0.3.0-2+b2 108.1 kB437.0 kB [list of files]
mipsel 0.3.0-2+b2 108.0 kB414.0 kB [list of files]
ppc64 (unofficial port) 0.3.0-2+b2 119.7 kB481.0 kB [list of files]
ppc64el 0.3.0-2+b2 120.3 kB479.0 kB [list of files]
riscv64 (unofficial port) 0.3.0-2+b2 111.1 kB363.0 kB [list of files]
s390x 0.3.0-2+b2 107.5 kB415.0 kB [list of files]
sh4 (unofficial port) 0.3.0-2+b2 131.8 kB385.0 kB [list of files]
sparc64 (unofficial port) 0.3.0-2+b2 105.1 kB419.0 kB [list of files]
x32 (unofficial port) 0.3.0-2+b2 123.0 kB410.0 kB [list of files]