Package: python3-pairtools (1.1.3-1 and others)

[ Source: pairtools  ]

Framework to process sequencing data from a Hi-C experiment

Simple and fast command-line framework to process sequencing data from a Hi-C experiment.

Process pair-end sequence alignments and perform the following operations:

  - Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
    sequences of Hi-C DNA molecules
  - Sort .pairs files for downstream analyses
  - Detect, tag and remove PCR/optical duplicates
  - Generate extensive statistics of Hi-C datasets
  - Select Hi-C pairs given flexibly defined criteria
  - Restore .sam alignments from Hi-C pairs

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• dep: cython3 [hppa, ia64, ppc64, sparc64, x32]

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• dep: libc6 (>= 2.14) [amd64]

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  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.16) [x32]

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.27) [riscv64]

  dep: libc6 (>= 2.3.4) [hppa]

  dep: libc6 (>= 2.4) [m68k, mips64el, ppc64, sparc64]

  dep: libc6 (>= 2.40) [loong64, sh4]

• dep: libc6.1 (>= 2.33) [ia64]

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  dep: libc6.1 (>= 2.4) [alpha]

• dep: libgcc-s1 (>= 3.0) [not hppa, ia64, m68k, ppc64, sparc64, x32]

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• dep: libgcc-s2 (>= 4.2.1) [m68k]

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• dep: libstdc++6 (>= 11) [not hppa, ia64, ppc64, sparc64, x32]

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  dep: python3 (<< 3.12) [hppa, ppc64, sparc64]

  dep: python3 (<< 3.14) [not hppa, ia64, ppc64, sparc64, x32]

  dep: python3 (>= 3.10~) [hppa, ia64, ppc64, sparc64, x32]

  dep: python3 (>= 3.12~) [m68k, sh4]

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Download python3-pairtools

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.1.3-1+b1	188.7 kB	928.0 kB	[list of files]
amd64	1.1.3-1+b1	202.2 kB	833.0 kB	[list of files]
arm64	1.1.3-1+b1	184.7 kB	925.0 kB	[list of files]
hppa (unofficial port)	0.3.0-3.2+b2	144.6 kB	640.0 kB	[list of files]
ia64 (unofficial port)	0.3.0-3.2+b1	137.3 kB	612.0 kB	[list of files]
loong64 (unofficial port)	1.1.3-1+b2	193.9 kB	925.0 kB	[list of files]
m68k (unofficial port)	1.1.2-1	216.9 kB	1,096.0 kB	[list of files]
mips64el	1.1.3-1+b1	180.3 kB	940.0 kB	[list of files]
ppc64 (unofficial port)	0.3.0-3.2+b2	146.6 kB	752.0 kB	[list of files]
ppc64el	1.1.3-1+b1	196.2 kB	989.0 kB	[list of files]
riscv64	1.1.3-1+b1	198.3 kB	733.0 kB	[list of files]
sh4 (unofficial port)	1.1.2-1	279.6 kB	1,312.0 kB	[list of files]
sparc64 (unofficial port)	0.3.0-3.2+b2	125.9 kB	2,292.0 kB	[list of files]
x32 (unofficial port)	0.3.0-3.2+b1	121.6 kB	405.0 kB	[list of files]