Package: python3-pairtools (0.3.0-2 and others)

[ Source: pairtools  ]

Framework to process sequencing data from a Hi-C experiment

Simple and fast command-line framework to process sequencing data from a Hi-C experiment.

Process pair-end sequence alignments and perform the following operations:

  - Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
    sequences of Hi-C DNA molecules
  - Sort .pairs files for downstream analyses
  - Detect, tag and remove PCR/optical duplicates
  - Generate extensive statistics of Hi-C datasets
  - Select Hi-C pairs given flexibly defined criteria
  - Restore .sam alignments from Hi-C pairs

Other Packages Related to python3-pairtools

• dep: cython3

  C-Extensions for Python 3

• dep: libc6 (>= 2.14) [amd64]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.16) [x32]

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.27) [riscv64]

  dep: libc6 (>= 2.3.4) [hppa]

  dep: libc6 (>= 2.31) [sh4]

  dep: libc6 (>= 2.4) [not alpha, amd64, arm64, hppa, ppc64el, riscv64, sh4, x32]

• dep: libc6.1 (>= 2.4) [alpha]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.10)

  dep: python3 (>= 3.9~)

• dep: python3-click

  Wrapper around optparse for command line utilities - Python 3.x

• dep: python3-nose

  test discovery and running for Python3 unittest

• dep: python3-numpy

  Fast array facility to the Python 3 language

Download python3-pairtools

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	0.3.0-2+b2	113.6 kB	440.0 kB	[list of files]
amd64	0.3.0-2+b2	121.3 kB	440.0 kB	[list of files]
arm64	0.3.0-2+b2	110.5 kB	407.0 kB	[list of files]
armel	0.3.0-2+b2	109.3 kB	394.0 kB	[list of files]
armhf	0.3.0-2+b2	109.4 kB	342.0 kB	[list of files]
hppa (unofficial port)	0.3.0-2+b2	115.4 kB	429.0 kB	[list of files]
i386	0.3.0-2+b2	119.7 kB	426.0 kB	[list of files]
m68k (unofficial port)	0.3.0-2+b2	107.5 kB	396.0 kB	[list of files]
mips64el	0.3.0-2+b2	108.1 kB	437.0 kB	[list of files]
mipsel	0.3.0-2+b2	108.0 kB	414.0 kB	[list of files]
ppc64 (unofficial port)	0.3.0-2+b2	119.7 kB	481.0 kB	[list of files]
ppc64el	0.3.0-2+b2	120.3 kB	479.0 kB	[list of files]
riscv64 (unofficial port)	0.3.0-2+b2	111.1 kB	363.0 kB	[list of files]
s390x	0.3.0-2+b2	107.5 kB	415.0 kB	[list of files]
sh4 (unofficial port)	0.3.0-2+b2	131.8 kB	385.0 kB	[list of files]
sparc64 (unofficial port)	0.3.0-2+b2	105.1 kB	419.0 kB	[list of files]
x32 (unofficial port)	0.3.0-2+b2	123.0 kB	410.0 kB	[list of files]