Package: progressivemauve (1.2.0+4713+dfsg-6 and others)

[ Source: progressivemauve  ]

multiple genome alignment algorithms

The mauveAligner and progressiveMauve alignment algorithms have been implemented as command-line programs included with the downloadable Mauve software. When run from the command-line, these programs provide options not yet available in the graphical interface.

Mauve is a system for efficiently constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion. Multiple genome alignment provides a basis for research into comparative genomics and the study of evolutionary dynamics. Aligning whole genomes is a fundamentally different problem than aligning short sequences.

Mauve has been developed with the idea that a multiple genome aligner should require only modest computational resources. It employs algorithmic techniques that scale well in the amount of sequence being aligned. For example, a pair of Y. pestis genomes can be aligned in under a minute, while a group of 9 divergent Enterobacterial genomes can be aligned in a few hours.

Mauve computes and interactively visualizes genome sequence comparisons. Using FastA or GenBank sequence data, Mauve constructs multiple genome alignments that identify large-scale rearrangement, gene gain, gene loss, indels, and nucleotide substutition.

Mauve is developed at the University of Wisconsin.

Other Packages Related to progressivemauve

• dep: libboost-filesystem1.83.0 (>= 1.83.0) [ia64, x32]

  filesystem operations (portable paths, iteration over directories, etc) in C++

• dep: libboost-filesystem1.90.0 (>= 1.90.0) [not ia64, x32]

  filesystem operations (portable paths, iteration over directories, etc) in C++

• dep: libboost-iostreams1.83.0 (>= 1.83.0) [ia64, x32]

  Boost.Iostreams Library

• dep: libboost-iostreams1.90.0 (>= 1.90.0) [not ia64, x32]

  Boost.Iostreams Library

• dep: libboost-program-options1.83.0 (>= 1.83.0) [ia64, x32]

  program options library for C++

• dep: libboost-program-options1.90.0 (>= 1.90.0) [not ia64, x32]

  program options library for C++

• dep: libc6 (>= 2.38) [not alpha, ia64, loong64, sh4]

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  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.42) [loong64, sh4]

• dep: libc6.1 (>= 2.37) [ia64]

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  dep: libc6.1 (>= 2.38) [alpha]

• dep: libgcc-s1 (>= 3.0) [arm64, loong64, ppc64el]

  GCC support library

  dep: libgcc-s1 (>= 3.4) [amd64, ppc64, riscv64, x32]

  dep: libgcc-s1 (>= 3.5) [armhf]

  dep: libgcc-s1 (>= 4.2) [alpha, i386, ia64, s390x, sh4, sparc64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libgcc-s4 (>= 4.1.1) [hppa]

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• dep: libgenome0 (>= 1.3.11+svn20110227.4616)

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• dep: libmems1 (>= 1.6.0+4725) [ia64]

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  dep: libstdc++6 (>= 14) [x32]

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• enh: mauve-aligner

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Download progressivemauve

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.2.0+4713+dfsg-6+b1	885.9 kB	6,249.0 kB	[list of files]
amd64	1.2.0+4713+dfsg-6+b1	852.8 kB	5,377.0 kB	[list of files]
arm64	1.2.0+4713+dfsg-6+b1	787.8 kB	5,777.0 kB	[list of files]
armhf	1.2.0+4713+dfsg-6+b1	670.5 kB	4,022.0 kB	[list of files]
hppa (unofficial port)	1.2.0+4713+dfsg-6+b1	914.7 kB	5,169.0 kB	[list of files]
i386	1.2.0+4713+dfsg-6+b1	838.8 kB	5,218.0 kB	[list of files]
ia64 (unofficial port)	1.2.0+4713+dfsg-5+b2	1,091.3 kB	9,489.0 kB	[list of files]
loong64	1.2.0+4713+dfsg-6+b1	867.9 kB	6,222.0 kB	[list of files]
m68k (unofficial port)	1.2.0+4713+dfsg-6+b1	700.6 kB	4,932.0 kB	[list of files]
ppc64 (unofficial port)	1.2.0+4713+dfsg-6+b1	844.5 kB	7,185.0 kB	[list of files]
ppc64el	1.2.0+4713+dfsg-6+b1	862.5 kB	6,543.0 kB	[list of files]
riscv64	1.2.0+4713+dfsg-6+b1	888.8 kB	4,377.0 kB	[list of files]
s390x	1.2.0+4713+dfsg-6+b1	739.5 kB	5,342.0 kB	[list of files]
sh4 (unofficial port)	1.2.0+4713+dfsg-6+b1	789.4 kB	5,046.0 kB	[list of files]
sparc64 (unofficial port)	1.2.0+4713+dfsg-6+b1	778.8 kB	27,859.0 kB	[list of files]
x32 (unofficial port)	1.2.0+4713+dfsg-6+b1	873.3 kB	5,118.0 kB	[list of files]