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[ Source: megadepth  ]

Package: megadepth (1.2.0-4 and others)

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computes coverage from BigWig and BAM sequencing files

A major concern for the interpretation of DNA and RNA (!) sequencing is the number of reads that cover a particular area. This package has interesting statistics for the distinction of coding and non-coding parts of the genome and knows how to interpret transcripts that span multiple exons.

This package is a successor of the program 'bamcount'.

Other Packages Related to megadepth

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  • suggests
  • enhances

Download megadepth

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha (unofficial port) 1.2.0-4+b1 78.4 kB276.0 kB [list of files]
amd64 1.2.0-4+b1 81.0 kB275.0 kB [list of files]
arm64 1.2.0-4+b1 71.0 kB275.0 kB [list of files]
armel 1.2.0-4+b1 70.9 kB234.0 kB [list of files]
armhf 1.2.0-4+b1 72.5 kB178.0 kB [list of files]
hppa (unofficial port) 1.2.0-4+b1 80.2 kB252.0 kB [list of files]
i386 1.2.0-4+b1 84.1 kB274.0 kB [list of files]
ia64 (unofficial port) 1.2.0-4+b1 99.7 kB467.0 kB [list of files]
mips64el 1.2.0-4+b1 71.9 kB282.0 kB [list of files]
ppc64 (unofficial port) 1.2.0-4+b1 81.5 kB339.0 kB [list of files]
ppc64el 1.2.0-4+b1 83.3 kB339.0 kB [list of files]
riscv64 1.2.0-4+b2 79.8 kB219.0 kB [list of files]
s390x 1.2.0-4+b1 82.1 kB271.0 kB [list of files]
sh4 (unofficial port) 1.2.0-4+b1 91.8 kB275.0 kB [list of files]
sparc64 (unofficial port) 1.2.0-4+b1 70.2 kB1,047.0 kB [list of files]
x32 (unofficial port) 1.2.0-4+b1 83.8 kB258.0 kB [list of files]