Package: megadepth (1.2.0-5 and others)

[ Source: megadepth  ]

computes coverage from BigWig and BAM sequencing files

A major concern for the interpretation of DNA and RNA (!) sequencing is the number of reads that cover a particular area. This package has interesting statistics for the distinction of coding and non-coding parts of the genome and knows how to interpret transcripts that span multiple exons.

This package is a successor of the program 'bamcount'.

Other Packages Related to megadepth

• dep: libbigwig0t64 (>= 0.4.6) [ia64]

  C library for handling bigWig files

• dep: libc6 (>= 2.38) [not alpha, ia64, loong64, sh4]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.41) [loong64, sh4]

• dep: libc6.1 (>= 2.37) [ia64]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.38) [alpha]

• dep: libcurl3t64-gnutls (>= 7.16.2) [not ia64]

  easy-to-use client-side URL transfer library (GnuTLS flavour)

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, loong64, ppc64, ppc64el, s390x, x32]

  GCC support library

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sparc64]

  dep: libgcc-s1 (>= 3.5) [armhf]

  dep: libgcc-s1 (>= 4.2) [ia64, sh4]

  dep: libgcc-s1 (>= 7) [i386]

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support library

• dep: libhts3t64 (>= 1.17)

  C library for high-throughput sequencing data formats

• dep: libstdc++6 (>= 13.1)

  GNU Standard C++ Library v3

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: zlib1g (>= 1:1.2.0) [not ia64]

  compression library - runtime

• sug: r-bioc-megadepth

  BioCOnductor BigWig and BAM related utilities

Download megadepth

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.2.0-5+b1	105.3 kB	404.0 kB	[list of files]
amd64	1.2.0-5+b1	110.2 kB	343.0 kB	[list of files]
arm64	1.2.0-5+b1	92.9 kB	339.0 kB	[list of files]
armhf	1.2.0-5+b1	95.8 kB	274.0 kB	[list of files]
hppa (unofficial port)	1.2.0-5+b1	103.7 kB	320.0 kB	[list of files]
i386	1.2.0-5+b1	119.6 kB	370.0 kB	[list of files]
ia64 (unofficial port)	1.2.0-4+b1	99.7 kB	467.0 kB	[list of files]
loong64 (unofficial port)	1.2.0-5+b1	101.0 kB	339.0 kB	[list of files]
ppc64 (unofficial port)	1.2.0-5+b1	108.0 kB	403.0 kB	[list of files]
ppc64el	1.2.0-5+b1	111.7 kB	403.0 kB	[list of files]
riscv64	1.2.0-5+b1	106.3 kB	259.0 kB	[list of files]
s390x	1.2.0-5+b1	105.5 kB	339.0 kB	[list of files]
sh4 (unofficial port)	1.2.0-5+b1	116.9 kB	339.0 kB	[list of files]
sparc64 (unofficial port)	1.2.0-5+b1	90.4 kB	1,047.0 kB	[list of files]
x32 (unofficial port)	1.2.0-5+b1	116.9 kB	346.0 kB	[list of files]