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[ Source: theseus  ]

Package: theseus (3.3.0-6 and others)

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superimpose macromolecules using maximum likelihood

Theseus is a program that simultaneously superimposes multiple macromolecular structures. Theseus finds the optimal solution to the superposition problem using the method of maximum likelihood. By down-weighting variable regions of the superposition and by correcting for correlations among atoms, the ML superposition method produces very accurate structural alignments.

When macromolecules with different residue sequences are superimposed, other programs and algorithms discard residues that are aligned with gaps. Theseus, however, uses a novel superimposition algorithm that includes all of the data.

Tags: Biology: Proteins, Field: Biology, field::biology:bioinformatics, field::biology:structural, Implemented in: C, User Interface: interface::commandline, role::program, Purpose: Analysing, use::comparing, works-with-format::plaintext

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Download theseus

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha (unofficial port) 3.3.0-6 386.2 kB947.0 kB [list of files]
amd64 3.3.0-6 414.4 kB1,071.0 kB [list of files]
arm64 3.3.0-6 337.8 kB791.0 kB [list of files]
armel 3.3.0-6 290.4 kB885.0 kB [list of files]
armhf 3.3.0-6 272.3 kB698.0 kB [list of files]
hppa (unofficial port) 3.3.0-6 337.6 kB812.0 kB [list of files]
hurd-i386 3.3.0-6 277.7 kB897.0 kB [list of files]
i386 3.3.0-6 287.2 kB833.0 kB [list of files]
kfreebsd-amd64 3.3.0-5 410.6 kB1,082.0 kB [list of files]
kfreebsd-i386 3.3.0-6 287.2 kB833.0 kB [list of files]
m68k (unofficial port) 3.3.0-6 256.1 kB857.0 kB [list of files]
mips 3.3.0-6 326.6 kB863.0 kB [list of files]
mips64el 3.3.0-6+b1 334.3 kB867.0 kB [list of files]
mipsel 3.3.0-6 338.1 kB879.0 kB [list of files]
powerpc 3.3.0-6 334.4 kB1,001.0 kB [list of files]
powerpcspe (unofficial port) 3.3.0-6 371.6 kB1,001.0 kB [list of files]
ppc64 (unofficial port) 3.3.0-6 346.8 kB939.0 kB [list of files]
ppc64el 3.3.0-6 405.8 kB1,003.0 kB [list of files]
s390x 3.3.0-6 314.7 kB951.0 kB [list of files]
sh4 (unofficial port) 3.3.0-6 354.6 kB753.0 kB [list of files]
sparc64 (unofficial port) 3.3.0-6 320.2 kB815.0 kB [list of files]
x32 (unofficial port) 3.3.0-5 403.4 kB1,081.0 kB [list of files]