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[ Source: theseus  ]

Package: theseus (3.3.0-5)

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superimpose macromolecules using maximum likelihood

Theseus is a program that simultaneously superimposes multiple macromolecular structures. Theseus finds the optimal solution to the superposition problem using the method of maximum likelihood. By down-weighting variable regions of the superposition and by correcting for correlations among atoms, the ML superposition method produces very accurate structural alignments.

When macromolecules with different residue sequences are superimposed, other programs and algorithms discard residues that are aligned with gaps. Theseus, however, uses a novel superimposition algorithm that includes all of the data.

Tags: Biology: Proteins, Field: Biology, field::biology:bioinformatics, field::biology:structural, Implemented in: C, User Interface: interface::commandline, role::program, Purpose: Analysing, use::comparing, works-with-format::plaintext

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Download theseus

Download for all available architectures
Architecture Package Size Installed Size Files
alpha (unofficial port) 390.9 kB954.0 kB [list of files]
amd64 410.5 kB1,082.0 kB [list of files]
arm64 347.8 kB814.0 kB [list of files]
armel 290.2 kB905.0 kB [list of files]
armhf 276.1 kB609.0 kB [list of files]
hppa (unofficial port) 346.8 kB835.0 kB [list of files]
hurd-i386 283.6 kB848.0 kB [list of files]
i386 283.5 kB848.0 kB [list of files]
kfreebsd-amd64 410.6 kB1,082.0 kB [list of files]
kfreebsd-i386 283.5 kB848.0 kB [list of files]
m68k (unofficial port) 241.2 kB792.0 kB [list of files]
mips 326.8 kB853.0 kB [list of files]
mips64el 336.3 kB845.0 kB [list of files]
mipsel 344.0 kB905.0 kB [list of files]
powerpc 325.8 kB809.0 kB [list of files]
powerpcspe (unofficial port) 364.9 kB873.0 kB [list of files]
ppc64 (unofficial port) 336.4 kB876.0 kB [list of files]
ppc64el 411.0 kB1,002.0 kB [list of files]
s390x 324.4 kB966.0 kB [list of files]
sh4 (unofficial port) 350.7 kB716.0 kB [list of files]
sparc64 (unofficial port) 318.1 kB821.0 kB [list of files]
x32 (unofficial port) 403.4 kB1,081.0 kB [list of files]