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[ Source: htslib  ]

Package: tabix (1.17+ds-1)

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generic indexer for TAB-delimited genome position files

Tabix indexes files where some columns indicate sequence coordinates: name (usually a chromosome), start and stop. The input data file must be position sorted and compressed by bgzip (provided in this package), which has a gzip like interface. After indexing, tabix is able to quickly retrieve data lines by chromosomal coordinates. Fast data retrieval also works over network if an URI is given as a file name.

This package is built from the HTSlib source, and provides the bgzip, htsfile, and tabix tools.

Tags: Implemented in: C, Role: Program, Science: science::calculation, use::calculating, Supports Format: HTML, Hypertext Markup Language, Works with: Text

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Download tabix

Download for all available architectures
Architecture Package Size Installed Size Files
alpha (unofficial port) 461.5 kB2,632.0 kB [list of files]
amd64 455.2 kB2,215.0 kB [list of files]
arm64 422.5 kB2,243.0 kB [list of files]
armel 386.3 kB1,988.0 kB [list of files]
armhf 387.3 kB1,424.0 kB [list of files]
hppa (unofficial port) 447.5 kB2,244.0 kB [list of files]
i386 498.9 kB2,516.0 kB [list of files]
ia64 (unofficial port) 547.6 kB4,588.0 kB [list of files]
m68k (unofficial port) 416.2 kB2,056.0 kB [list of files]
mips64el 419.0 kB2,609.0 kB [list of files]
ppc64 (unofficial port) 478.7 kB3,139.0 kB [list of files]
ppc64el 489.9 kB2,947.0 kB [list of files]
riscv64 472.6 kB1,854.0 kB [list of files]
s390x 412.5 kB2,331.0 kB [list of files]
sh4 (unofficial port) 476.5 kB1,987.0 kB [list of files]
sparc64 (unofficial port) 390.6 kB3,154.0 kB [list of files]
x32 (unofficial port) 453.2 kB2,140.0 kB [list of files]