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[ Source: maqview  ]

Package: maqview (0.2.5-6)

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graphical read alignment viewer for short gene sequences

Maqview is graphical read alignment viewer. It is specifically designed for the Maq alignment file and allows you to see the mismatches, base qualities and mapping qualities. Maqview is nothing fancy as Consed or GAP, but just a simple viewer for you to see what happens in a particular region.

In comparison to tgap-maq, the text-based read alignment viewer writen by James Bonfield, Maqview is faster and takes up much less memory and disk space in indexing. This is possibly because tgap aims to be a general-purpose viewer but Maqview fully makes use of the fact that a Maq alignment file has already been sorted. Maqview is also efficient in viewing and provides a command-line tool to quickly retrieve any region in an Maq alignment file.

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Download maqview

Download for all available architectures
Architecture Package Size Installed Size Files
alpha (unofficial port) 345.2 kB759.0 kB [list of files]
amd64 293.9 kB631.0 kB [list of files]
arm64 (unofficial port) 89.6 kB555.0 kB [list of files]
armel 266.7 kB532.0 kB [list of files]
armhf 244.5 kB416.0 kB [list of files]
hppa (unofficial port) 105.7 kB543.0 kB [list of files]
hurd-i386 284.8 kB604.0 kB [list of files]
i386 287.9 kB561.0 kB [list of files]
m68k (unofficial port) 240.9 kB519.0 kB [list of files]
mips 283.3 kB618.0 kB [list of files]
mipsel 286.5 kB626.0 kB [list of files]
powerpc 293.9 kB584.0 kB [list of files]
powerpcspe (unofficial port) 286.3 kB584.0 kB [list of files]
ppc64 (unofficial port) 301.1 kB689.0 kB [list of files]
s390x 329.3 kB719.0 kB [list of files]
sh4 (unofficial port) 286.9 kB555.0 kB [list of files]
sparc 274.6 kB578.0 kB [list of files]
sparc64 (unofficial port) 279.1 kB618.0 kB [list of files]
x32 (unofficial port) 283.0 kB597.0 kB [list of files]