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[ Source: maqview  ]

Package: maqview (0.2.5-8)

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graphical read alignment viewer for short gene sequences

Maqview is graphical read alignment viewer. It is specifically designed for the Maq alignment file and allows you to see the mismatches, base qualities and mapping qualities. Maqview is nothing fancy as Consed or GAP, but just a simple viewer for you to see what happens in a particular region.

In comparison to tgap-maq, the text-based read alignment viewer written by James Bonfield, Maqview is faster and takes up much less memory and disk space in indexing. This is possibly because tgap aims to be a general-purpose viewer but Maqview fully makes use of the fact that a Maq alignment file has already been sorted. Maqview is also efficient in viewing and provides a command-line tool to quickly retrieve any region in an Maq alignment file.

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Download maqview

Download for all available architectures
Architecture Package Size Installed Size Files
alpha (unofficial port) 123.3 kB750.0 kB [list of files]
amd64 110.9 kB610.0 kB [list of files]
arm64 95.6 kB550.0 kB [list of files]
armel 94.8 kB526.0 kB [list of files]
armhf 95.3 kB398.0 kB [list of files]
hppa (unofficial port) 108.6 kB570.0 kB [list of files]
hurd-i386 121.6 kB637.0 kB [list of files]
i386 120.6 kB637.0 kB [list of files]
m68k (unofficial port) 97.5 kB529.0 kB [list of files]
mips 113.6 kB650.0 kB [list of files]
mips64el 113.7 kB712.0 kB [list of files]
mipsel 115.5 kB650.0 kB [list of files]
powerpc 104.1 kB754.0 kB [list of files]
powerpcspe (unofficial port) 102.3 kB690.0 kB [list of files]
ppc64 (unofficial port) 108.7 kB882.0 kB [list of files]
ppc64el 107.4 kB882.0 kB [list of files]
s390x 107.3 kB694.0 kB [list of files]
sh4 (unofficial port) 114.4 kB490.0 kB [list of files]
sparc64 (unofficial port) 94.2 kB595.0 kB [list of files]
x32 (unofficial port) 110.3 kB578.0 kB [list of files]