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[ Source: maq  ]

Package: maq (0.7.1-7)

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maps short fixed-length polymorphic DNA sequence reads to reference sequences

Maq (short for Mapping and Assembly with Quality) builds mapping assemblies from short reads generated by the next-generation sequencing machines. It was particularly designed for Illumina-Solexa 1G Genetic Analyzer, and has a preliminary functionality to handle ABI SOLiD data. Maq is previously known as mapass2.

Developmemt of Maq stopped in 2008. Its successors are BWA and SAMtools.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c++, implemented-in::perl, User Interface: Command Line, Role: role::program, scope::utility, Purpose: Need an extra tag, Analysing, use::comparing, use::searching, Supports Format: Need an extra tag, works-with-format::plaintext, works-with::TODO

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Download maq

Download for all available architectures
Architecture Package Size Installed Size Files
alpha (unofficial port) 316.5 kB614.0 kB [list of files]
amd64 304.2 kB549.0 kB [list of files]
arm64 293.0 kB521.0 kB [list of files]
armel 304.4 kB573.0 kB [list of files]
armhf 305.0 kB501.0 kB [list of files]
hppa (unofficial port) 320.6 kB578.0 kB [list of files]
hurd-i386 321.6 kB613.0 kB [list of files]
i386 320.9 kB613.0 kB [list of files]
kfreebsd-amd64 304.2 kB553.0 kB [list of files]
kfreebsd-i386 320.9 kB613.0 kB [list of files]
m68k (unofficial port) 307.3 kB580.0 kB [list of files]
mips 314.8 kB598.0 kB [list of files]
mips64el 305.5 kB596.0 kB [list of files]
mipsel 316.4 kB598.0 kB [list of files]
powerpc 316.5 kB637.0 kB [list of files]
powerpcspe (unofficial port) 318.4 kB637.0 kB [list of files]
ppc64 (unofficial port) 306.4 kB637.0 kB [list of files]
ppc64el 305.4 kB637.0 kB [list of files]
s390x 298.3 kB585.0 kB [list of files]
sh4 (unofficial port) 338.6 kB549.0 kB [list of files]
sparc64 (unofficial port) 301.3 kB568.0 kB [list of files]
x32 (unofficial port) 305.0 kB553.0 kB [list of files]