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[ Source: maq  ]

Package: maq (0.7.1-8)

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maps short fixed-length polymorphic DNA sequence reads to reference sequences

Maq (short for Mapping and Assembly with Quality) builds mapping assemblies from short reads generated by the next-generation sequencing machines. It was particularly designed for Illumina-Solexa 1G Genetic Analyzer, and has a preliminary functionality to handle ABI SOLiD data. Maq is previously known as mapass2.

Developmemt of Maq stopped in 2008. Its successors are BWA and SAMtools.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c++, implemented-in::perl, User Interface: Command Line, Role: role::program, scope::utility, Purpose: Need an extra tag, Analysing, use::comparing, use::searching, Supports Format: Need an extra tag, works-with-format::plaintext, works-with::TODO

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Download maq

Download for all available architectures
Architecture Package Size Installed Size Files
alpha (unofficial port) 315.6 kB606.0 kB [list of files]
amd64 305.4 kB553.0 kB [list of files]
arm64 293.7 kB521.0 kB [list of files]
armel 299.0 kB556.0 kB [list of files]
armhf 302.6 kB492.0 kB [list of files]
hppa (unofficial port) 318.9 kB573.0 kB [list of files]
i386 319.8 kB609.0 kB [list of files]
m68k (unofficial port) 306.7 kB580.0 kB [list of files]
mips64el 304.9 kB592.0 kB [list of files]
mipsel 314.2 kB594.0 kB [list of files]
powerpcspe (unofficial port) 312.9 kB637.0 kB [list of files]
ppc64 (unofficial port) 306.3 kB637.0 kB [list of files]
ppc64el 312.0 kB637.0 kB [list of files]
riscv64 (unofficial port) 303.3 kB494.0 kB [list of files]
s390x 295.0 kB565.0 kB [list of files]
sh4 (unofficial port) 333.9 kB541.0 kB [list of files]
sparc64 (unofficial port) 298.5 kB560.0 kB [list of files]
x32 (unofficial port) 305.7 kB561.0 kB [list of files]