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[ Source: maq  ]

Package: maq (0.7.1-5 and others)

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maps short fixed-length polymorphic DNA sequence reads to reference sequences

Maq (short for Mapping and Assembly with Quality) builds mapping assemblies from short reads generated by the next-generation sequencing machines. It was particularly designed for Illumina-Solexa 1G Genetic Analyzer, and has a preliminary functionality to handle ABI SOLiD data. Maq is previously known as mapass2.

Developmemt of Maq stopped in 2008. Its successors are BWA and SAMtools.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c++, implemented-in::perl, User Interface: Command Line, Role: role::program, scope::utility, Purpose: Need an extra tag, Analysing, use::comparing, use::searching, Supports Format: Need an extra tag, works-with-format::plaintext, works-with::TODO

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Download maq

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha (unofficial port) 0.7.1-5+b1 307.8 kB596.0 kB [list of files]
amd64 0.7.1-5+b1 294.6 kB536.0 kB [list of files]
arm64 0.7.1-5+b1 285.4 kB512.0 kB [list of files]
armel 0.7.1-5+b1 291.0 kB547.0 kB [list of files]
armhf 0.7.1-5+b1 292.3 kB483.0 kB [list of files]
hppa (unofficial port) 0.7.1-5 308.1 kB587.0 kB [list of files]
hurd-i386 0.7.1-5+b2 305.0 kB579.0 kB [list of files]
i386 0.7.1-5+b1 305.1 kB579.0 kB [list of files]
kfreebsd-amd64 0.7.1-5+b1 294.5 kB536.0 kB [list of files]
kfreebsd-i386 0.7.1-5+b1 305.0 kB579.0 kB [list of files]
m68k (unofficial port) 0.7.1-5 317.0 kB530.0 kB [list of files]
mips 0.7.1-5+b1 304.3 kB588.0 kB [list of files]
mipsel 0.7.1-5+b1 305.3 kB588.0 kB [list of files]
powerpc 0.7.1-5+b1 305.4 kB627.0 kB [list of files]
powerpcspe (unofficial port) 0.7.1-5 345.2 kB542.0 kB [list of files]
ppc64 (unofficial port) 0.7.1-5+b1 297.6 kB631.0 kB [list of files]
ppc64el 0.7.1-5+b1 298.1 kB628.0 kB [list of files]
s390x 0.7.1-5+b1 290.5 kB563.0 kB [list of files]
sh4 (unofficial port) 0.7.1-5 345.4 kB578.0 kB [list of files]
sparc64 (unofficial port) 0.7.1-5 330.4 kB578.0 kB [list of files]
x32 (unofficial port) 0.7.1-5+b1 295.3 kB539.0 kB [list of files]