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[ Source: maq  ]

Package: maq (0.7.1-6 and others)

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maps short fixed-length polymorphic DNA sequence reads to reference sequences

Maq (short for Mapping and Assembly with Quality) builds mapping assemblies from short reads generated by the next-generation sequencing machines. It was particularly designed for Illumina-Solexa 1G Genetic Analyzer, and has a preliminary functionality to handle ABI SOLiD data. Maq is previously known as mapass2.

Developmemt of Maq stopped in 2008. Its successors are BWA and SAMtools.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c++, implemented-in::perl, User Interface: Command Line, Role: role::program, scope::utility, Purpose: Need an extra tag, Analysing, use::comparing, use::searching, Supports Format: Need an extra tag, works-with-format::plaintext, works-with::TODO

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Download maq

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha (unofficial port) 0.7.1-6 309.5 kB599.0 kB [list of files]
amd64 0.7.1-6 296.1 kB539.0 kB [list of files]
arm64 0.7.1-6 286.9 kB515.0 kB [list of files]
armel 0.7.1-6 292.6 kB550.0 kB [list of files]
armhf 0.7.1-6 293.8 kB486.0 kB [list of files]
hppa (unofficial port) 0.7.1-6 314.2 kB571.0 kB [list of files]
hurd-i386 0.7.1-6 306.7 kB582.0 kB [list of files]
i386 0.7.1-6 306.8 kB582.0 kB [list of files]
kfreebsd-amd64 0.7.1-6 296.2 kB539.0 kB [list of files]
kfreebsd-i386 0.7.1-6 306.7 kB582.0 kB [list of files]
m68k (unofficial port) 0.7.1-6 291.8 kB550.0 kB [list of files]
mips 0.7.1-6 307.4 kB587.0 kB [list of files]
mips64el 0.7.1-6 300.7 kB584.0 kB [list of files]
mipsel 0.7.1-6 308.9 kB591.0 kB [list of files]
powerpc 0.7.1-6 307.0 kB630.0 kB [list of files]
powerpcspe (unofficial port) 0.7.1-6 309.4 kB566.0 kB [list of files]
ppc64 (unofficial port) 0.7.1-6+b1 299.4 kB633.0 kB [list of files]
ppc64el 0.7.1-6 298.2 kB631.0 kB [list of files]
s390x 0.7.1-6 292.1 kB566.0 kB [list of files]
sh4 (unofficial port) 0.7.1-6 321.0 kB522.0 kB [list of files]
sparc64 (unofficial port) 0.7.1-6 292.2 kB553.0 kB [list of files]
x32 (unofficial port) 0.7.1-6 297.0 kB542.0 kB [list of files]