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[ Source: maq  ]

Package: maq (0.7.1-5 and others)

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maps short fixed-length polymorphic DNA sequence reads to reference sequences

Maq (short for Mapping and Assembly with Quality) builds mapping assemblies from short reads generated by the next-generation sequencing machines. It was particularly designed for Illumina-Solexa 1G Genetic Analyzer, and has a preliminary functionality to handle ABI SOLiD data. Maq is previously known as mapass2.

Developmemt of Maq stopped in 2008. Its successors are BWA and SAMtools.

Tags: Biology: Nucleic Acids, Field: Biology, field::biology:bioinformatics, implemented-in::c++, Implemented in: Perl, User Interface: interface::commandline, role::program, Scope: Utility, Purpose: Need an extra tag, use::analysing, use::comparing, Searching, Supports Format: works-with-format::TODO, works-with-format::plaintext, Works with: Need an extra tag

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Download maq

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha (unofficial port) 0.7.1-5 344.2 kB616.0 kB [list of files]
amd64 0.7.1-5 313.9 kB559.0 kB [list of files]
arm64 (unofficial port) 0.7.1-5 284.2 kB535.0 kB [list of files]
armel 0.7.1-5 330.9 kB578.0 kB [list of files]
armhf 0.7.1-5 324.7 kB522.0 kB [list of files]
hppa (unofficial port) 0.7.1-5 308.1 kB587.0 kB [list of files]
hurd-i386 0.7.1-5+b1 323.1 kB598.0 kB [list of files]
i386 0.7.1-5 322.2 kB594.0 kB [list of files]
kfreebsd-amd64 0.7.1-5 312.2 kB514.0 kB [list of files]
kfreebsd-i386 0.7.1-5 319.1 kB549.0 kB [list of files]
m68k (unofficial port) 0.7.1-5 317.0 kB530.0 kB [list of files]
mips 0.7.1-5 336.5 kB603.0 kB [list of files]
mipsel 0.7.1-5 338.5 kB603.0 kB [list of files]
powerpc 0.7.1-5 345.4 kB590.0 kB [list of files]
powerpcspe (unofficial port) 0.7.1-5 345.2 kB542.0 kB [list of files]
ppc64 (unofficial port) 0.7.1-5 328.0 kB592.0 kB [list of files]
s390x 0.7.1-5 327.2 kB595.0 kB [list of files]
sh4 (unofficial port) 0.7.1-5 345.4 kB578.0 kB [list of files]
sparc 0.7.1-5 343.8 kB599.0 kB [list of files]
sparc64 (unofficial port) 0.7.1-5 330.4 kB578.0 kB [list of files]
x32 (unofficial port) 0.7.1-5 315.3 kB566.0 kB [list of files]