Package: lumpy-sv (0.3.1+dfsg-7 and others)

[ Source: lumpy-sv  ]

general probabilistic framework for structural variant discovery

LUMPY, a novel SV discovery framework that naturally integrates multiple SV signals jointly across multiple samples. LUMPY yields improved sensitivity, especially when SV signal is reduced owing to either low coverage data or low intra-sample variant allele frequency.

Other Packages Related to lumpy-sv

• dep: bamkit

  tools for common BAM file manipulations

• dep: libbamtools2.4.0 [sparc64]

  Package not available

• dep: libbamtools2.5.1 (>= 2.5.1+dfsg) [hppa, ppc64]

  Package not available

• dep: libbamtools2.5.2 (>= 2.5.2+dfsg) [not hppa, ppc64, sparc64]

  dynamic library for manipulating BAM (genome alignment) files

• dep: libc6 (>= 2.29) [hppa, ppc64, sparc64]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.34) [not alpha, hppa, ia64, ppc64, sh4, sparc64]

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libcurl4 (>= 7.16.2) [hppa, sparc64]

  easy-to-use client-side URL transfer library (OpenSSL flavour)

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, mips64el, ppc64, ppc64el, x32]

  GCC support library

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sparc64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, ia64, sh4]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support library

• dep: libgzstream0 (>= 1.5+dfsg)

  provide functionality of zlib C-library in a C++ iostream

• dep: libhts3 (>= 1.10) [hppa, ppc64, sparc64]

  C library for high-throughput sequencing data formats

• dep: libhts3t64 (>= 1.17) [not hppa, ppc64, sparc64]

  C library for high-throughput sequencing data formats

• dep: libssl1.1 (>= 1.1.0) [hppa, sparc64]

  Package not available

• dep: libstdc++6 (>= 13.1) [not hppa, ppc64, sparc64]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 9) [hppa, ppc64, sparc64]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-numpy

  Fast array facility to the Python language (Python 3)

• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: samblaster

  marks duplicates, extracts discordant/split reads

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• dep: zlib1g (>= 1:1.1.4) [hppa, sparc64]

  compression library - runtime

• rec: sambamba

  tools for working with SAM/BAM data

Download lumpy-sv

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	0.3.1+dfsg-7+b1	185.1 kB	806.0 kB	[list of files]
amd64	0.3.1+dfsg-7+b1	205.3 kB	689.0 kB	[list of files]
arm64	0.3.1+dfsg-7+b1	168.9 kB	677.0 kB	[list of files]
armel	0.3.1+dfsg-7+b1	162.2 kB	567.0 kB	[list of files]
armhf	0.3.1+dfsg-7+b1	169.2 kB	443.0 kB	[list of files]
hppa (unofficial port)	0.3.1+dfsg-1	192.6 kB	673.0 kB	[list of files]
i386	0.3.1+dfsg-7+b1	221.6 kB	735.0 kB	[list of files]
ia64 (unofficial port)	0.3.1+dfsg-7+b1	238.6 kB	1,187.0 kB	[list of files]
m68k (unofficial port)	0.3.1+dfsg-7+b1	184.6 kB	627.0 kB	[list of files]
mips64el	0.3.1+dfsg-7+b1	175.8 kB	777.0 kB	[list of files]
ppc64 (unofficial port)	0.3.1+dfsg-1	182.5 kB	803.0 kB	[list of files]
ppc64el	0.3.1+dfsg-7+b1	194.5 kB	805.0 kB	[list of files]
riscv64	0.3.1+dfsg-7+b2	189.7 kB	537.0 kB	[list of files]
sh4 (unofficial port)	0.3.1+dfsg-7+b1	222.3 kB	676.0 kB	[list of files]
sparc64 (unofficial port)	0.3.1+dfsg-1	151.6 kB	584.0 kB	[list of files]
x32 (unofficial port)	0.3.1+dfsg-7+b1	211.4 kB	671.0 kB	[list of files]