Package: libssw0 (1.1-14 and others)

[ Source: libssw  ]

fast SIMD parallelized implementation of the Smith-Waterman algorithm

SSW is a fast implementation of the Smith-Waterman algorithm, which uses the Single-Instruction Multiple-Data (SIMD) instructions to parallelize the algorithm at the instruction level. SSW library provides an API that can be flexibly used by programs written in C, C++ and other languages. The library can do protein and genome alignment directly. Current version of this implementation is ~50 times faster than an ordinary Smith-Waterman. It can return the Smith-Waterman score, alignment location and traceback path (cigar) of the optimal alignment accurately; and return the sub-optimal alignment score and location heuristically.

Tags: Role: Shared Library

Other Packages Related to libssw0

• dep: libc6 (>= 2.14) [amd64]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.16) [x32]

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.27) [riscv64]

  dep: libc6 (>= 2.37) [sh4]

  dep: libc6 (>= 2.4) [armel, armhf, i386, m68k, mips64el, ppc64, s390x, sparc64]

• dep: libc6.1 (>= 2.37) [ia64]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.4) [alpha]

• dep: libgcc-s1 (>= 3.0) [not armel, armhf, ia64, m68k]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libstdc++6 (>= 11)

  GNU Standard C++ Library v3

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: zlib1g

  compression library - runtime

Download libssw0

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.1-14	24.1 kB	84.0 kB	[list of files]
amd64	1.1-14	20.4 kB	55.0 kB	[list of files]
arm64	1.1-14	18.8 kB	83.0 kB	[list of files]
armel	1.1-14	19.9 kB	59.0 kB	[list of files]
armhf	1.1-14	20.4 kB	51.0 kB	[list of files]
i386	1.1-14	25.0 kB	79.0 kB	[list of files]
ia64 (unofficial port)	1.1-14	28.7 kB	89.0 kB	[list of files]
m68k (unofficial port)	1.1-14	22.9 kB	67.0 kB	[list of files]
mips64el	1.1-14	24.6 kB	85.0 kB	[list of files]
ppc64 (unofficial port)	1.1-14	25.1 kB	83.0 kB	[list of files]
ppc64el	1.1-14	19.4 kB	83.0 kB	[list of files]
riscv64	1.1-14+b1	25.1 kB	60.0 kB	[list of files]
s390x	1.1-14	24.7 kB	67.0 kB	[list of files]
sh4 (unofficial port)	1.1-14	26.8 kB	83.0 kB	[list of files]
sparc64 (unofficial port)	1.1-14	22.9 kB	1,045.0 kB	[list of files]
x32 (unofficial port)	1.1-14	20.5 kB	55.0 kB	[list of files]