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[ Source: lagan  ]

Package: lagan (2.0-6)

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highly parametrizable pairwise global genome sequence aligner

Lagan takes local alignments generated by CHAOS as anchors, and limits the search area of the Needleman-Wunsch algorithm around these anchors.

Multi-LAGAN is a generalization of the pairwise algorithm to multiple sequence alignment. M-LAGAN performs progressive pairwise alignments, guided by a user-specified phylogenetic tree. Alignments are aligned to other alignments using the sum-of-pairs metric.

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Download lagan

Download for all available architectures
Architecture Package Size Installed Size Files
alpha (unofficial port) 180.8 kB816.0 kB [list of files]
amd64 174.9 kB820.0 kB [list of files]
arm64 169.4 kB736.0 kB [list of files]
armel 159.7 kB665.0 kB [list of files]
armhf 160.2 kB565.0 kB [list of files]
hppa (unofficial port) 173.1 kB717.0 kB [list of files]
i386 183.8 kB821.0 kB [list of files]
m68k (unofficial port) 152.3 kB665.0 kB [list of files]
mips64el 179.1 kB832.0 kB [list of files]
mipsel 181.0 kB761.0 kB [list of files]
ppc64 (unofficial port) 188.4 kB2,024.0 kB [list of files]
ppc64el 196.7 kB1,888.0 kB [list of files]
riscv64 (unofficial port) 165.8 kB636.0 kB [list of files]
s390x 170.7 kB784.0 kB [list of files]
sh4 (unofficial port) 175.1 kB613.0 kB [list of files]
sparc64 (unofficial port) 155.2 kB773.0 kB [list of files]
x32 (unofficial port) 170.5 kB781.0 kB [list of files]