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[ Source: hinge  ]

Package: hinge (0.5.0-7 and others)

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long read genome assembler based on hinging

HINGE is a genome assembler that seeks to achieve optimal repeat resolution by distinguishing repeats that can be resolved given the data from those that cannot. This is accomplished by adding “hinges” to reads for constructing an overlap graph where only unresolvable repeats are merged. As a result, HINGE combines the error resilience of overlap-based assemblers with repeat-resolution capabilities of de Bruijn graph assemblers.

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Download hinge

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha (unofficial port) 0.5.0-2 393.0 kB2,835.0 kB [list of files]
amd64 0.5.0-7+b1 493.9 kB3,312.0 kB [list of files]
arm64 0.5.0-7+b1 444.1 kB3,316.0 kB [list of files]
armel 0.5.0-7+b1 423.0 kB3,183.0 kB [list of files]
armhf 0.5.0-7+b1 426.0 kB2,543.0 kB [list of files]
hppa (unofficial port) 0.5.0-2 366.1 kB2,439.0 kB [list of files]
i386 0.5.0-7+b1 494.7 kB3,511.0 kB [list of files]
m68k (unofficial port) 0.5.0-7 440.5 kB3,086.0 kB [list of files]
mips64el 0.5.0-7+b1 433.9 kB3,827.0 kB [list of files]
mipsel 0.5.0-7+b1 436.6 kB3,681.0 kB [list of files]
ppc64 (unofficial port) 0.5.0-2 367.3 kB3,140.0 kB [list of files]
ppc64el 0.5.0-7+b1 475.4 kB4,212.0 kB [list of files]
riscv64 (unofficial port) 0.5.0-7+b1 481.4 kB2,745.0 kB [list of files]
sparc64 (unofficial port) 0.5.0-2 328.1 kB2,445.0 kB [list of files]
x32 (unofficial port) 0.5.0-6 530.1 kB3,850.0 kB [list of files]