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[ Source: grabix  ]

Package: grabix (0.1.7-2)

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wee tool for random access into BGZF files

In biomedical research it is increasing practice to study the genetic basis of disease. This now frequently comprises the sequencing of human sequences. The output of the machine however is redundant, and the real sequence is the best sequence to explain the redundancy. The exchange of data happens only with compressed files - to huge and redundant to perform otherwise. One should avoid uncompression whenever possible.

grabix leverages the fantastic BGZF library of the samtools package to provide random access into text files that have been compressed with bgzip. grabix creates it's own index (.gbi) of the bgzipped file. Once indexed, one can extract arbitrary lines from the file with the grab command. Or choose random lines with the, well, random command.

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Download grabix

Download for all available architectures
Architecture Package Size Installed Size Files
alpha (unofficial port) 15.0 kB52.0 kB [list of files]
amd64 14.4 kB56.0 kB [list of files]
arm64 13.9 kB52.0 kB [list of files]
armel 15.0 kB51.0 kB [list of files]
armhf 14.4 kB43.0 kB [list of files]
hppa (unofficial port) 16.8 kB52.0 kB [list of files]
i386 15.8 kB55.0 kB [list of files]
m68k (unofficial port) 26.7 kB108.0 kB [list of files]
mips64el 15.0 kB53.0 kB [list of files]
mipsel 16.1 kB52.0 kB [list of files]
ppc64 (unofficial port) 15.2 kB92.0 kB [list of files]
ppc64el 14.9 kB92.0 kB [list of files]
riscv64 (unofficial port) 14.0 kB48.0 kB [list of files]
sh4 (unofficial port) 27.9 kB108.0 kB [list of files]
sparc64 (unofficial port) 13.6 kB54.0 kB [list of files]
x32 (unofficial port) 14.5 kB55.0 kB [list of files]