Package: r-bioc-multtest (2.58.0-1 and others)

[ Source: r-bioc-multtest  ]

Bioconductor resampling-based multiple hypothesis testing

Non-parametric bootstrap and permutation resampling-based multiple testing procedures (including empirical Bayes methods) for controlling the family-wise error rate (FWER), generalized family-wise error rate (gFWER), tail probability of the proportion of false positives (TPPFP), and false discovery rate (FDR). Several choices of bootstrap-based null distribution are implemented (centered, centered and scaled, quantile-transformed). Single-step and step-wise methods are available. Tests based on a variety of t- and F-statistics (including t-statistics based on regression parameters from linear and survival models as well as those based on correlation parameters) are included. When probing hypotheses with t-statistics, users may also select a potentially faster null distribution which is multivariate normal with mean zero and variance covariance matrix derived from the vector influence function. Results are reported in terms of adjusted p-values, confidence regions and test statistic cutoffs. The procedures are directly applicable to identifying differentially expressed genes in DNA microarray experiments.

Other Packages Related to r-bioc-multtest

• dep: libc6 (>= 2.27) [riscv64]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.29) [not alpha, ia64, riscv64, sh4]

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.29) [alpha]

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  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: r-api-4.0

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• dep: r-api-bioc-3.18

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• dep: r-bioc-biobase

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• dep: r-bioc-biocgenerics

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• dep: r-cran-mass

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• dep: r-cran-survival

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• sug: r-cran-snow

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Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	2.58.0-1	818.2 kB	1,070.0 kB	[list of files]
amd64	2.58.0-1	818.2 kB	1,054.0 kB	[list of files]
arm64	2.58.0-1	816.5 kB	1,071.0 kB	[list of files]
armel	2.58.0-1	816.8 kB	1,050.0 kB	[list of files]
armhf	2.58.0-1	814.3 kB	1,038.0 kB	[list of files]
hppa (unofficial port)	2.58.0-1	818.6 kB	1,063.0 kB	[list of files]
i386	2.58.0-1	820.9 kB	1,065.0 kB	[list of files]
ia64 (unofficial port)	2.58.0-1	824.4 kB	1,102.0 kB	[list of files]
m68k (unofficial port)	2.58.0-1	813.5 kB	1,046.0 kB	[list of files]
mips64el	2.58.0-1	816.0 kB	1,075.0 kB	[list of files]
ppc64 (unofficial port)	2.58.0-1	822.6 kB	1,136.0 kB	[list of files]
ppc64el	2.58.0-1	822.6 kB	1,071.0 kB	[list of files]
riscv64	2.58.0-1+b1	817.9 kB	1,048.0 kB	[list of files]
s390x	2.58.0-1	821.7 kB	1,066.0 kB	[list of files]
sh4 (unofficial port)	2.58.0-1	818.1 kB	1,070.0 kB	[list of files]
sparc64 (unofficial port)	2.58.0-1	814.5 kB	2,032.0 kB	[list of files]
x32 (unofficial port)	2.58.0-1	817.3 kB	1,049.0 kB	[list of files]