Package: garlic (1.6-3 and others)

[ Source: garlic  ]

visualization program for biomolecules

Garlic is written for the investigation of membrane proteins. It may be used to visualize other proteins, as well as some geometric objects. This version of garlic recognizes PDB format version 2.1. Garlic may also be used to analyze protein sequences.

It only depends on the X libraries, no other libraries are needed.

Features include:

 - The slab position and thickness are visible in a small window.
 - Atomic bonds as well as atoms are treated as independent drawable
   objects.
 - The atomic and bond colors depend on position. Five mapping modes
   are available (as for slab).
 - Capable to display stereo image.
 - Capable to display other geometric objects, like membrane.
 - Atomic information is available for atom covered by the mouse
   pointer. No click required, just move the mouse pointer over the
   structure!
 - Capable to load more than one structure.
 - Capable to draw Ramachandran plot, helical wheel, Venn diagram,
   averaged hydrophobicity and hydrophobic moment plot.
 - The command prompt is available at the bottom of the main window.
   It is able to display one error message and one command string.

Tags: Field: Biology, Chemistry, User Interface: interface::commandline, interface::graphical, X Window System, Role: Program, Scope: scope::utility, uitoolkit::xlib, Purpose: Data Visualization, X Window System: Application

Other Packages Related to garlic

• dep: libc6 (>= 2.11) [hppa]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.14) [amd64]

  dep: libc6 (>= 2.16) [x32]

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.28) [sh4]

  dep: libc6 (>= 2.34) [riscv64]

  dep: libc6 (>= 2.7) [armel, armhf, i386, m68k, mips64el, ppc64, s390x, sparc64]

• dep: libc6.1 (>= 2.28) [ia64]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.7) [alpha]

• dep: libx11-6

  X11 client-side library

• sug: garlic-doc

  [Chemistry] a molecular visualization program - documents

• sug: openbabel

  Chemical toolbox utilities (cli)

Download garlic

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.6-3	231.8 kB	961.0 kB	[list of files]
amd64	1.6-3+b1	218.3 kB	833.0 kB	[list of files]
arm64	1.6-3	206.8 kB	776.0 kB	[list of files]
armel	1.6-3	200.0 kB	764.0 kB	[list of files]
armhf	1.6-3	191.2 kB	596.0 kB	[list of files]
hppa (unofficial port)	1.6-3	205.2 kB	746.0 kB	[list of files]
i386	1.6-3	212.6 kB	868.0 kB	[list of files]
ia64 (unofficial port)	1.6-3	263.8 kB	1,400.0 kB	[list of files]
m68k (unofficial port)	1.6-3	190.1 kB	740.0 kB	[list of files]
mips64el	1.6-3	213.1 kB	909.0 kB	[list of files]
ppc64 (unofficial port)	1.6-3	230.6 kB	984.0 kB	[list of files]
ppc64el	1.6-3	257.4 kB	1,176.0 kB	[list of files]
riscv64	1.6-3+b1	230.4 kB	708.0 kB	[list of files]
s390x	1.6-3	188.4 kB	788.0 kB	[list of files]
sh4 (unofficial port)	1.6-3	259.7 kB	756.0 kB	[list of files]
sparc64 (unofficial port)	1.6-3	190.7 kB	787.0 kB	[list of files]
x32 (unofficial port)	1.6-3	216.5 kB	800.0 kB	[list of files]