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[ Source: flye  ]

Package: flye (2.9+dfsg-2)

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de novo assembler for single molecule sequencing reads using repeat graphs

Flye is a de novo assembler for single molecule sequencing reads, such as those produced by PacBio and Oxford Nanopore Technologies. It is designed for a wide range of datasets, from small bacterial projects to large mammalian-scale assemblies. The package represents a complete pipeline: it takes raw PacBio / ONT reads as input and outputs polished contigs. Flye also has a special mode for metagenome assembly.

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Download flye

Download for all available architectures
Architecture Package Size Installed Size Files
alpha (unofficial port) 22,600.5 kB37,109.0 kB [list of files]
amd64 22,604.9 kB36,840.0 kB [list of files]
arm64 22,538.0 kB36,664.0 kB [list of files]
mips64el 22,539.6 kB37,031.0 kB [list of files]
ppc64 (unofficial port) 22,605.5 kB37,214.0 kB [list of files]
ppc64el 22,618.8 kB37,148.0 kB [list of files]
riscv64 (unofficial port) 22,582.4 kB36,492.0 kB [list of files]
s390x 22,563.6 kB36,948.0 kB [list of files]