Package: flye (2.9+dfsg-2)

[ Source: flye  ]

de novo assembler for single molecule sequencing reads using repeat graphs

Flye is a de novo assembler for single molecule sequencing reads, such as those produced by PacBio and Oxford Nanopore Technologies. It is designed for a wide range of datasets, from small bacterial projects to large mammalian-scale assemblies. The package represents a complete pipeline: it takes raw PacBio / ONT reads as input and outputs polished contigs. Flye also has a special mode for metagenome assembly.

Other Packages Related to flye

• dep: libatomic1 (>= 4.8) [riscv64]

  support library providing __atomic built-in functions

• dep: libc6 (>= 2.33) [not alpha]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libc6.1 (>= 2.33) [alpha]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

• dep: libgcc-s1 (>= 3.0) [not alpha, riscv64]

  GCC support library

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64]

• dep: libstdc++6 (>= 11)

  GNU Standard C++ Library v3

• dep: minimap2

  versatile pairwise aligner for genomic and spliced nucleotide sequences

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

Download flye

Download for all available architectures

Architecture	Package Size	Installed Size	Files
alpha (unofficial port)	22,600.5 kB	37,109.0 kB	[list of files]
amd64	22,604.9 kB	36,840.0 kB	[list of files]
arm64	22,538.0 kB	36,664.0 kB	[list of files]
mips64el	22,539.6 kB	37,031.0 kB	[list of files]
ppc64 (unofficial port)	22,605.5 kB	37,214.0 kB	[list of files]
ppc64el	22,618.8 kB	37,148.0 kB	[list of files]
riscv64 (unofficial port)	22,582.4 kB	36,492.0 kB	[list of files]
s390x	22,563.6 kB	36,948.0 kB	[list of files]