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[ Source: fasttree  ]

Package: fasttree (2.1.10-1)

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phylogenetic trees from alignments of nucleotide or protein sequences

FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. It handles alignments with up to a million of sequences in a reasonable amount of time and memory. For large alignments, FastTree is 100-1,000 times faster than PhyML 3.0 or RAxML 7.

FastTree is more accurate than PhyML 3 with default settings, and much more accurate than the distance-matrix methods that are traditionally used for large alignments. FastTree uses the Jukes-Cantor or generalized time-reversible (GTR) models of nucleotide evolution and the JTT (Jones-Taylor-Thornton 1992) model of amino acid evolution. To account for the varying rates of evolution across sites, FastTree uses a single rate for each site (the "CAT" approximation). To quickly estimate the reliability of each split in the tree, FastTree computes local support values with the Shimodaira-Hasegawa test (these are the same as PhyML 3's "SH-like local supports").

This package contains a single threaded version (fasttree) and a parallel version which uses OpenMP (fasttreMP).

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Download for all available architectures
Architecture Package Size Installed Size Files
alpha (unofficial port) 171.6 kB521.0 kB [list of files]
amd64 171.0 kB459.0 kB [list of files]
arm64 154.6 kB427.0 kB [list of files]
armel 168.8 kB499.0 kB [list of files]
armhf 159.7 kB371.0 kB [list of files]
hppa (unofficial port) 165.0 kB453.0 kB [list of files]
hurd-i386 173.2 kB491.0 kB [list of files]
i386 172.7 kB491.0 kB [list of files]
kfreebsd-amd64 171.0 kB459.0 kB [list of files]
kfreebsd-i386 172.6 kB491.0 kB [list of files]
m68k (unofficial port) 157.3 kB455.0 kB [list of files]
mips 167.1 kB497.0 kB [list of files]
mips64el 168.5 kB517.0 kB [list of files]
mipsel 169.3 kB497.0 kB [list of files]
powerpcspe (unofficial port) 164.3 kB503.0 kB [list of files]
ppc64 (unofficial port) 165.9 kB631.0 kB [list of files]
ppc64el 164.8 kB503.0 kB [list of files]
s390x 161.2 kB483.0 kB [list of files]
sh4 (unofficial port) 182.2 kB427.0 kB [list of files]
sparc64 (unofficial port) 158.9 kB475.0 kB [list of files]
x32 (unofficial port) 170.0 kB451.0 kB [list of files]