Package: embassy-domalign (0.1.660-5 and others)

[ Source: embassy-domalign  ]

Extra EMBOSS commands for protein domain alignment

The DOMALIGN programs were developed by Jon Ison and colleagues at MRC HGMP for their protein domain research. They are included as an EMBASSY package as a work in progress.

Applications in the current domalign release are allversusall (sequence similarity data from all-versus-all comparison), domainalign (generates alignments (DAF file) for nodes in a DCF file), domainrep (reorders DCF file to identify representative structures) and seqalign (extend alignments (DAF file) with sequences (DHF file)).

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Application Suite: suite::TODO, use::analysing, Purpose: Comparing, Editing, Supports Format: works-with-format::TODO, works-with-format::plaintext, Works with: Need an extra tag

Other Packages Related to embassy-domalign

• dep: emboss-lib (<< 6.6.1~)

  EMBOSS Libraries

  dep: emboss-lib (>= 6.6.0+dfsg)

• dep: libc6 (>= 2.16) [x32]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.31) [sh4]

  dep: libc6 (>= 2.34) [not alpha, ia64, m68k, sh4, x32]

  dep: libc6 (>= 2.4) [m68k]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libx11-6

  X11 client-side library

• rec: emboss

  European molecular biology open software suite

• sug: embassy

  Package not available

Download embassy-domalign

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	0.1.660-5	65.5 kB	792.0 kB	[list of files]
amd64	0.1.660-5	65.9 kB	616.0 kB	[list of files]
arm64	0.1.660-5	64.2 kB	792.0 kB	[list of files]
hppa (unofficial port)	0.1.660-4	65.8 kB	593.0 kB	[list of files]
ia64 (unofficial port)	0.1.660-5	69.6 kB	637.0 kB	[list of files]
m68k (unofficial port)	0.1.660-4	67.0 kB	597.0 kB	[list of files]
mips64el	0.1.660-5	64.3 kB	795.0 kB	[list of files]
ppc64 (unofficial port)	0.1.660-5	65.9 kB	792.0 kB	[list of files]
ppc64el	0.1.660-5	66.4 kB	792.0 kB	[list of files]
riscv64	0.1.660-5	64.3 kB	592.0 kB	[list of files]
sh4 (unofficial port)	0.1.660-4	68.4 kB	589.0 kB	[list of files]
sparc64 (unofficial port)	0.1.660-5	64.5 kB	4,638.0 kB	[list of files]
x32 (unofficial port)	0.1.660-4	66.4 kB	597.0 kB	[list of files]