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[ Source: elph  ]

Package: elph (1.0.1-3 and others)

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DNA/protein sequence motif finder

ELPH (Estimated Locations of Pattern Hits) is a general-purpose Gibbs sampler for finding motifs in a set of DNA or protein sequences. The program takes as input a set containing anywhere from a few dozen to thousands of sequences, and searches through them for the most common motif, assuming that each sequence contains one copy of the motif. We have used ELPH to find patterns such as ribosome binding sites (RBSs) and exon splicing enhancers (ESEs).

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Download elph

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha (unofficial port) 1.0.1-3 50.9 kB158.0 kB [list of files]
amd64 1.0.1-3 50.8 kB134.0 kB [list of files]
arm64 1.0.1-3 45.8 kB126.0 kB [list of files]
armel 1.0.1-3 42.6 kB117.0 kB [list of files]
armhf 1.0.1-3 43.5 kB89.0 kB [list of files]
hppa (unofficial port) 1.0.1-3 46.0 kB118.0 kB [list of files]
i386 1.0.1-3 53.4 kB145.0 kB [list of files]
m68k (unofficial port) 1.0.1-3 42.5 kB118.0 kB [list of files]
mips64el 1.0.1-3 49.9 kB151.0 kB [list of files]
mipsel 1.0.1-3 48.0 kB142.0 kB [list of files]
powerpcspe (unofficial port) 1.0.1-2 31.8 kB151.0 kB [list of files]
ppc64 (unofficial port) 1.0.1-3 55.5 kB215.0 kB [list of files]
ppc64el 1.0.1-3 56.0 kB214.0 kB [list of files]
riscv64 (unofficial port) 1.0.1-3 46.3 kB94.0 kB [list of files]
s390x 1.0.1-3 46.9 kB138.0 kB [list of files]
sh4 (unofficial port) 1.0.1-3 53.2 kB109.0 kB [list of files]
sparc64 (unofficial port) 1.0.1-3 42.0 kB128.0 kB [list of files]
x32 (unofficial port) 1.0.1-3 48.9 kB125.0 kB [list of files]