Package: edlib-aligner (1.2.7-7 and others)

[ Source: libedlib  ]

edlib sequence alignment tool using edit distance

Edlib is a lightweight and super fast C/C++ library for sequence alignment using edit distance. This package provides an aligner using this library.

Features of libedlib

 * Calculates edit distance (Levehnstein distance).
 * It can find optimal alignment path (instructions how to transform
   first sequence into the second sequence).
 * It can find just the start and/or end locations of alignment path -
   can be useful when speed is more important than having exact
   alignment path.
 * Supports multiple alignment methods: global(NW), prefix(SHW) and
   infix(HW), each of them useful for different scenarios.
 * You can extend character equality definition, enabling you to e.g.
   have wildcard characters, to have case insensitive alignment or to
   work with degenerate nucleotides.
 * It can easily handle small or very large sequences, even when finding
   alignment path, while consuming very little memory.
 * Super fast thanks to Myers's bit-vector algorithm.

Other Packages Related to edlib-aligner

• dep: libc6 (>= 2.38) [not alpha, ia64, loong64, sh4]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.41) [loong64, sh4]

• dep: libc6.1 (>= 2.37) [ia64]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.38) [alpha]

• dep: libedlib1 (= 1.2.7-5) [ia64]

  library for sequence alignment using edit distance

  dep: libedlib1 (= 1.2.7-5+b1) [x32]

  dep: libedlib1 (= 1.2.7-7+b1) [not ia64, x32]

• dep: libgcc-s1 (>= 3.0) [x32]

  GCC support library

  dep: libgcc-s1 (>= 3.3.1) [not armhf, hppa, ia64, m68k, x32]

  dep: libgcc-s1 (>= 3.5) [armhf]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support library

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

Download edlib-aligner

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.2.7-7+b1	21.7 kB	87.0 kB	[list of files]
amd64	1.2.7-7+b1	24.2 kB	67.0 kB	[list of files]
arm64	1.2.7-7+b1	24.1 kB	87.0 kB	[list of files]
armhf	1.2.7-7+b1	19.9 kB	86.0 kB	[list of files]
hppa (unofficial port)	1.2.7-7+b1	22.8 kB	55.0 kB	[list of files]
i386	1.2.7-7+b1	23.1 kB	62.0 kB	[list of files]
ia64 (unofficial port)	1.2.7-5	27.5 kB	86.0 kB	[list of files]
loong64 (unofficial port)	1.2.7-7+b1	23.5 kB	86.0 kB	[list of files]
m68k (unofficial port)	1.2.7-7+b1	21.5 kB	54.0 kB	[list of files]
ppc64 (unofficial port)	1.2.7-7+b1	23.7 kB	87.0 kB	[list of files]
ppc64el	1.2.7-7+b1	25.7 kB	87.0 kB	[list of files]
riscv64	1.2.7-7+b1	20.5 kB	47.0 kB	[list of files]
s390x	1.2.7-7+b1	24.7 kB	67.0 kB	[list of files]
sh4 (unofficial port)	1.2.7-7+b1	24.0 kB	86.0 kB	[list of files]
sparc64 (unofficial port)	1.2.7-7+b1	20.4 kB	1,048.0 kB	[list of files]
x32 (unofficial port)	1.2.7-5+b1	24.3 kB	66.0 kB	[list of files]