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Package: density-fitness (1.0.0-2)

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Calculates per-residue electron density scores

The program density-fitness calculates electron density metrics, for main- (includes Cβ atom) and side-chain atoms of individual residues.

For this calculation, the program uses the structure model in either PDB or mmCIF format and the electron density from the 2mFo-DFc and mFo-DFc maps. If these maps are not readily available, the MTZ file and model can be used to calculate maps clipper. Density-fitness support both X-ray and electron diffraction data.

This program is essentially a reimplementation of edstats, a program available from the CCP4 suite. However, the output now contains only the RSR, SRSR and RSCC fields as in edstats with the addition of EDIAm and OPIA and no longer requires pre-calculated map coefficients.

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Download density-fitness

Download for all available architectures
Architecture Package Size Installed Size Files
alpha (unofficial port) 104.0 kB430.0 kB [list of files]
amd64 101.7 kB375.0 kB [list of files]
arm64 93.6 kB359.0 kB [list of files]
armel 85.3 kB314.0 kB [list of files]
armhf 86.6 kB254.0 kB [list of files]
i386 106.5 kB361.0 kB [list of files]
m68k (unofficial port) 100.3 kB361.0 kB [list of files]
mips64el 95.9 kB437.0 kB [list of files]
mipsel 95.2 kB405.0 kB [list of files]
ppc64 (unofficial port) 105.1 kB531.0 kB [list of files]
ppc64el 105.4 kB467.0 kB [list of files]
riscv64 (unofficial port) 100.3 kB328.0 kB [list of files]
s390x 92.9 kB383.0 kB [list of files]
sh4 (unofficial port) 114.0 kB346.0 kB [list of files]