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[ Source: dascrubber  ]

Package: dascrubber (1.1-2)

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alignment-based scrubbing pipeline for DNA sequencing reads

The Dazzler Scrubbing Suite produces a set of edited reads that are guaranteed to

 * be continuous stretches of the underlying genome (i.e. no unremoved
   adapters and not chimers)
 * have no very low quality stretches (i.e. the error rate never exceeds some
   reasonable maximum, 20% or so in the case of Pacbio data).
Its secondary goal is to do so with the minimum removal of data and splitting of reads.

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Download dascrubber

Download for all available architectures
Architecture Package Size Installed Size Files
alpha (unofficial port) 159.0 kB1,381.0 kB [list of files]
amd64 164.8 kB1,185.0 kB [list of files]
arm64 142.4 kB1,109.0 kB [list of files]
armel 139.4 kB1,139.0 kB [list of files]
armhf 137.6 kB799.0 kB [list of files]
hppa (unofficial port) 149.8 kB1,169.0 kB [list of files]
i386 157.8 kB1,327.0 kB [list of files]
m68k (unofficial port) 141.8 kB1,139.0 kB [list of files]
mips64el 135.9 kB1,217.0 kB [list of files]
mipsel 142.7 kB1,279.0 kB [list of files]
ppc64 (unofficial port) 154.8 kB1,725.0 kB [list of files]
ppc64el 165.9 kB1,789.0 kB [list of files]
riscv64 (unofficial port) 143.8 kB809.0 kB [list of files]
s390x 155.3 kB1,237.0 kB [list of files]
sh4 (unofficial port) 159.5 kB999.0 kB [list of files]
sparc64 (unofficial port) 130.0 kB1,159.0 kB [list of files]
x32 (unofficial port) 158.8 kB1,151.0 kB [list of files]