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[ Source: concavity  ]

Package: concavity (0.1+dfsg.1-4)

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predictor of protein ligand binding sites from structure and conservation

ConCavity predicts protein ligand binding sites by combining evolutionary sequence conservation and 3D structure.

ConCavity takes as input a PDB format protein structure and optionally files that characterize the evolutionary sequence conservation of the chains in the structure file.

The following result files are produced by default:

 * Residue ligand binding predictions for each chain (*.scores).
 * Residue ligand binding predictions in a PDB format file (residue
   scores placed in the temp. factor field, *_residue.pdb).
 * Pocket prediction locations in a DX format file (*.dx).
 * PyMOL script to visualize the predictions (*.pml).

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Download concavity

Download for all available architectures
Architecture Package Size Installed Size Files
alpha (unofficial port) 289.1 kB663.0 kB [list of files]
amd64 289.1 kB582.0 kB [list of files]
arm64 277.1 kB554.0 kB [list of files]
armel 274.5 kB538.0 kB [list of files]
armhf 265.7 kB422.0 kB [list of files]
hppa (unofficial port) 289.2 kB600.0 kB [list of files]
i386 302.6 kB629.0 kB [list of files]
m68k (unofficial port) 288.0 kB589.0 kB [list of files]
mips64el 305.6 kB785.0 kB [list of files]
mipsel 310.3 kB728.0 kB [list of files]
powerpcspe (unofficial port) 296.1 kB694.0 kB [list of files]
ppc64 (unofficial port) 303.3 kB823.0 kB [list of files]
ppc64el 306.4 kB759.0 kB [list of files]
riscv64 (unofficial port) 289.6 kB507.0 kB [list of files]
s390x 275.6 kB586.0 kB [list of files]
sh4 (unofficial port) 324.9 kB622.0 kB [list of files]
sparc64 (unofficial port) 270.1 kB576.0 kB [list of files]
x32 (unofficial port) 288.3 kB565.0 kB [list of files]