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[ Source: clustalx  ]

Package: clustalx (2.1+lgpl-6)

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Multiple alignment of nucleic acid and protein sequences (graphical interface)

This package offers a GUI interface for the Clustal multiple sequence alignment program. It provides an integrated environment for performing multiple sequence- and profile-alignments to analyse the results. The sequence alignment is displayed in a window on the screen. A versatile coloring scheme has been incorporated to highlight conserved features in the alignment. For professional presentations, one should use the texshade LaTeX package or boxshade.

The pull-down menus at the top of the window allow you to select all the options required for traditional multiple sequence and profile alignment. You can cut-and-paste sequences to change the order of the alignment; you can select a subset of sequences to be aligned; you can select a sub-range of the alignment to be realigned and inserted back into the original alignment.

An alignment quality analysis can be performed and low-scoring segments or exceptional residues can be highlighted.

Tags: Biology: Clustal/ALN, Proteins, Field: field::biology, field::biology:bioinformatics, Implemented in: implemented-in::c, interface::commandline, User Interface: Graphical User Interface, interface::x11, role::program, Scope: Utility, Interface Toolkit: Lesstif/Motif, uitoolkit::qt, use::analysing, Purpose: Comparing, use::viewing, works-with-format::plaintext, Works with: Need an extra tag, X Window System: Application

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Architecture Package Size Installed Size Files
alpha (unofficial port) 427.9 kB1,686.0 kB [list of files]
amd64 426.9 kB1,338.0 kB [list of files]
arm64 392.5 kB1,297.0 kB [list of files]
armel 363.4 kB1,165.0 kB [list of files]
armhf 377.5 kB901.0 kB [list of files]
hppa (unofficial port) 434.0 kB1,506.0 kB [list of files]
hurd-i386 461.1 kB1,401.0 kB [list of files]
i386 457.9 kB1,397.0 kB [list of files]
kfreebsd-amd64 427.0 kB1,338.0 kB [list of files]
kfreebsd-i386 457.8 kB1,397.0 kB [list of files]
m68k (unofficial port) 387.7 kB1,265.0 kB [list of files]
mips 388.9 kB1,627.0 kB [list of files]
mips64el 396.4 kB1,690.0 kB [list of files]
mipsel 397.3 kB1,627.0 kB [list of files]
powerpc 416.3 kB1,529.0 kB [list of files]
powerpcspe (unofficial port) 401.6 kB1,465.0 kB [list of files]
ppc64 (unofficial port) 426.2 kB1,721.0 kB [list of files]
ppc64el 429.7 kB1,657.0 kB [list of files]
s390x 396.3 kB1,485.0 kB [list of files]
sh4 (unofficial port) 513.8 kB1,299.0 kB [list of files]
sparc64 (unofficial port) 359.4 kB1,366.0 kB [list of files]
x32 (unofficial port) 427.6 kB1,273.0 kB [list of files]