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[ Source: bowtie  ]

Package: bowtie (1.2.2+dfsg-4 and others)

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Ultrafast memory-efficient short read aligner

This package addresses the problem to interpret the results from the latest (2010) DNA sequencing technologies. Those will yield fairly short stretches and those cannot be interpreted directly. It is the challenge for tools like Bowtie to give a chromosomal location to the short stretches of DNA sequenced per run.

Bowtie aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its memory footprint small: typically about 2.2 GB for the human genome (2.9 GB for paired-end).

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c++, interface::commandline, Role: Program, Science: science::calculation, scope::utility, Purpose: Analysing, use::comparing, works-with::biological-sequence

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Download bowtie

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha (unofficial port) 1.2.2+dfsg-4 1,428.8 kB9,007.0 kB [list of files]
amd64 1.2.2+dfsg-4 1,631.2 kB7,087.0 kB [list of files]
arm64 1.2.2+dfsg-4 1,244.6 kB6,387.0 kB [list of files]
hppa (unofficial port) 1.0.0-6 894.0 kB3,548.0 kB [list of files]
kfreebsd-amd64 1.1.2-6 1,530.0 kB6,745.0 kB [list of files]
mips64el 1.2.2+dfsg-4 1,063.7 kB8,065.0 kB [list of files]
ppc64 (unofficial port) 1.2.2+dfsg-4 1,349.2 kB8,611.0 kB [list of files]
ppc64el 1.2.2+dfsg-4 1,390.0 kB8,415.0 kB [list of files]
s390x 1.2.2+dfsg-4 1,356.3 kB7,111.0 kB [list of files]
sh4 (unofficial port) 1.0.0-6 860.1 kB3,077.0 kB [list of files]
sparc64 (unofficial port) 1.2.2+dfsg-4 1,158.0 kB6,995.0 kB [list of files]
x32 (unofficial port) 1.0.1-2 878.8 kB3,264.0 kB [list of files]