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[ Source: bitseq  ]

Package: bitseq (0.7.5+dfsg-6)

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Bayesian Inference of Transcripts from Sequencing Data

BitSeq is an application for inferring expression levels of individual transcripts from sequencing (RNA-Seq) data and estimating differential expression (DE) between conditions. An advantage of this approach is the ability to account for both technical uncertainty and intrinsic biological variance in order to avoid false DE calls. The technical contribution to the uncertainty comes both from finite read-depth and the possibly ambiguous mapping of reads to multiple transcripts.

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Download bitseq

Download for all available architectures
Architecture Package Size Installed Size Files
alpha (unofficial port) 363.8 kB2,250.0 kB [list of files]
amd64 337.2 kB1,927.0 kB [list of files]
arm64 298.0 kB1,691.0 kB [list of files]
armel 282.4 kB1,606.0 kB [list of files]
armhf 286.8 kB1,158.0 kB [list of files]
hppa (unofficial port) 311.3 kB1,720.0 kB [list of files]
i386 362.5 kB2,022.0 kB [list of files]
m68k (unofficial port) 317.5 kB1,730.0 kB [list of files]
mips64el 320.9 kB2,167.0 kB [list of files]
mipsel 324.2 kB2,080.0 kB [list of files]
ppc64 (unofficial port) 344.7 kB2,855.0 kB [list of files]
ppc64el 343.5 kB2,471.0 kB [list of files]
riscv64 (unofficial port) 331.6 kB1,537.0 kB [list of files]
s390x 297.6 kB1,955.0 kB [list of files]
sh4 (unofficial port) 360.8 kB1,651.0 kB [list of files]
sparc64 (unofficial port) 289.1 kB1,793.0 kB [list of files]
x32 (unofficial port) 338.6 kB1,766.0 kB [list of files]