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[ Source: bali-phy  ]

Package: bali-phy (3.6.1+dfsg-2 and others)

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Bayesian Inference of Alignment and Phylogeny

BAli-Phy estimates multiple sequence alignments and evolutionary trees from unaligned DNA, amino acid, or codon sequences. BAli-Phy uses MCMC to estimate evolutionary trees, positive selection, and branch lengths while averaging over alternative alignments. BAli-Phy can display alignment ambiguity graphically in an alignment uncertainty (AU) plot.

BAli-Phy can also estimate phylogenies from a fixed alignment (like MrBayes and BEAST) using substitution models like GTR+gamma. BAli-Phy automatically estimates relative rates for each gene.

Other Packages Related to bali-phy

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Download bali-phy

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha (unofficial port) 3.6.1+dfsg-2 6,094.0 kB39,082.0 kB [list of files]
amd64 3.6.1+dfsg-2+b1 6,382.7 kB37,532.0 kB [list of files]
arm64 3.6.1+dfsg-2+b1 5,733.5 kB35,384.0 kB [list of files]
armel 3.6.1+dfsg-2+b1 4,895.0 kB31,410.0 kB [list of files]
armhf 3.6.1+dfsg-2+b1 4,485.1 kB23,018.0 kB [list of files]
hppa (unofficial port) 3.6.1+dfsg-1 6,099.3 kB37,152.0 kB [list of files]
i386 3.6.1+dfsg-2+b1 6,163.5 kB36,222.0 kB [list of files]
ia64 (unofficial port) 3.6.1+dfsg-1 9,006.8 kB69,870.0 kB [list of files]
m68k (unofficial port) 3.6.1+dfsg-2 5,531.7 kB34,830.0 kB [list of files]
mips64el 3.6.1+dfsg-2+b1 5,714.9 kB43,529.0 kB [list of files]
ppc64 (unofficial port) 3.6.1+dfsg-2+b1 5,936.4 kB42,892.0 kB [list of files]
ppc64el 3.6.1+dfsg-2+b1 6,244.1 kB41,282.0 kB [list of files]
riscv64 3.6.1+dfsg-2+b3 6,366.5 kB30,588.0 kB [list of files]
s390x 3.6.1+dfsg-2+b1 5,010.0 kB35,052.0 kB [list of files]
sparc64 (unofficial port) 3.6.1+dfsg-2+b1 5,065.6 kB63,553.0 kB [list of files]
x32 (unofficial port) 3.5.0.1+dfsg-1 5,788.7 kB33,442.0 kB [list of files]