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[ Source: arden  ]

Package: arden (1.0-5 and others)

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specificity control for read alignments using an artificial reference

ARDEN (Artificial Reference Driven Estimation of false positives in NGS data) is a novel benchmark that estimates error rates based on real experimental reads and an additionally generated artificial reference genome. It allows the computation of error rates specifically for a dataset and the construction of a ROC-curve. Thereby, it can be used to optimize parameters for read mappers, to select read mappers for a specific problem or also to filter alignments based on quality estimation.

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Download arden

Download for all available architectures
Architecture Version Package Size Installed Size Files
all 1.0-5 87.2 kB1,156.0 kB [list of files]
alpha (unofficial port) 1.0-2 86.6 kB1,155.0 kB [list of files]
arm64 (unofficial port) 1.0-1 88.8 kB1,161.0 kB [list of files]
hppa (unofficial port) 1.0-2 86.6 kB1,155.0 kB [list of files]
m68k (unofficial port) 1.0-2 86.6 kB1,155.0 kB [list of files]
powerpcspe (unofficial port) 1.0-2 86.6 kB1,155.0 kB [list of files]
ppc64 (unofficial port) 1.0-2 86.6 kB1,155.0 kB [list of files]
sparc64 (unofficial port) 1.0-2 86.6 kB1,155.0 kB [list of files]
x32 (unofficial port) 1.0-2 86.6 kB1,155.0 kB [list of files]