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[ Source: murasaki  ]

Package: murasaki (1.68.6-6 and others)

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homology detection tool across multiple large genomes

Murasaki is a scalable and fast, language theory-based homology detection tool across multiple large genomes. It enable whole-genome scale multiple genome global alignments. Supports unlimited length gapped-seed patterns and unique TF-IDF based filtering.

Murasaki is an anchor alignment software, which is

 * exteremely fast (17 CPU hours for whole Human x Mouse genome (with
   40 nodes: 52 wall minutes))
 * scalable (Arbitrarily parallelizable across multiple nodes using MPI.
   Even a single node with 16GB of ram can handle over 1Gbp of sequence.)
 * unlimited pattern length
 * repeat tolerant
 * intelligent noise reduction

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Download murasaki

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha (unofficial port) 1.68.6-6+b4 506.7 kB3,726.0 kB [list of files]
amd64 1.68.6-6+b4 467.7 kB3,011.0 kB [list of files]
arm64 1.68.6-6+b4 428.3 kB2,979.0 kB [list of files]
armel 1.68.6-6+b4 378.9 kB2,601.0 kB [list of files]
armhf 1.68.6-6+b4 382.8 kB1,941.0 kB [list of files]
hppa (unofficial port) 1.68.6-6+b4 506.1 kB3,422.0 kB [list of files]
hurd-i386 1.68.6-6+b4 452.3 kB2,773.0 kB [list of files]
i386 1.68.6-6+b4 485.2 kB2,973.0 kB [list of files]
kfreebsd-amd64 1.68.6-6+b4 447.8 kB2,871.0 kB [list of files]
kfreebsd-i386 1.68.6-6+b4 451.3 kB2,765.0 kB [list of files]
m68k (unofficial port) 1.68.6-6+b4 380.8 kB2,565.0 kB [list of files]
mips 1.68.6-6+b4 461.3 kB3,559.0 kB [list of files]
mips64el 1.68.6-6+b4 480.9 kB3,924.0 kB [list of files]
mipsel 1.68.6-6+b4 475.1 kB3,559.0 kB [list of files]
powerpc 1.68.6-6+b4 409.8 kB3,390.0 kB [list of files]
powerpcspe (unofficial port) 1.68.6-6+b4 416.1 kB3,395.0 kB [list of files]
ppc64 (unofficial port) 1.68.6-6+b4 426.6 kB4,107.0 kB [list of files]
ppc64el 1.68.6-6+b4 463.0 kB4,107.0 kB [list of files]
s390x 1.68.6-6+b4 443.1 kB3,459.0 kB [list of files]
sh4 (unofficial port) 1.68.6-6+b4 424.9 kB2,527.0 kB [list of files]
sparc64 (unofficial port) 1.68.6-6+b5 389.4 kB2,889.0 kB [list of files]
x32 (unofficial port) 1.68.6-6+b4 455.1 kB2,741.0 kB [list of files]