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[ Source: murasaki  ]

Package: murasaki (1.68.6-7)

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homology detection tool across multiple large genomes

Murasaki is a scalable and fast, language theory-based homology detection tool across multiple large genomes. It enable whole-genome scale multiple genome global alignments. Supports unlimited length gapped-seed patterns and unique TF-IDF based filtering.

Murasaki is an anchor alignment software, which is

 * exteremely fast (17 CPU hours for whole Human x Mouse genome (with
   40 nodes: 52 wall minutes))
 * scalable (Arbitrarily parallelizable across multiple nodes using MPI.
   Even a single node with 16GB of ram can handle over 1Gbp of sequence.)
 * unlimited pattern length
 * repeat tolerant
 * intelligent noise reduction

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Download murasaki

Download for all available architectures
Architecture Package Size Installed Size Files
alpha (unofficial port) 492.3 kB3,573.0 kB [list of files]
amd64 484.1 kB3,082.0 kB [list of files]
arm64 448.1 kB3,034.0 kB [list of files]
armel 373.1 kB2,584.0 kB [list of files]
armhf 378.4 kB1,936.0 kB [list of files]
hppa (unofficial port) 478.9 kB3,179.0 kB [list of files]
hurd-i386 490.3 kB2,992.0 kB [list of files]
i386 495.1 kB3,056.0 kB [list of files]
kfreebsd-amd64 475.7 kB3,018.0 kB [list of files]
kfreebsd-i386 491.3 kB2,992.0 kB [list of files]
m68k (unofficial port) 393.9 kB2,612.0 kB [list of files]
mips 456.8 kB3,596.0 kB [list of files]
mips64el 476.6 kB3,944.0 kB [list of files]
mipsel 471.1 kB3,596.0 kB [list of files]
powerpcspe (unofficial port) 422.3 kB3,458.0 kB [list of files]
ppc64 (unofficial port) 487.8 kB4,426.0 kB [list of files]
ppc64el 488.2 kB4,106.0 kB [list of files]
s390x 439.7 kB3,382.0 kB [list of files]
sh4 (unofficial port) 439.7 kB2,579.0 kB [list of files]
sparc64 (unofficial port) 407.6 kB3,101.0 kB [list of files]
x32 (unofficial port) 461.2 kB2,800.0 kB [list of files]