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[ Source: murasaki  ]

Package: murasaki (1.68.6-6 and others)

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homology detection tool across multiple large genomes

Murasaki is a scalable and fast, language theory-based homology detection tool across multiple large genomes. It enable whole-genome scale multiple genome global alignments. Supports unlimited length gapped-seed patterns and unique TF-IDF based filtering.

Murasaki is an anchor alignment software, which is

 * exteremely fast (17 CPU hours for whole Human x Mouse genome (with
   40 nodes: 52 wall minutes))
 * scalable (Arbitrarily parallelizable across multiple nodes using MPI.
   Even a single node with 16GB of ram can handle over 1Gbp of sequence.)
 * unlimited pattern length
 * repeat tolerant
 * intelligent noise reduction

Other Packages Related to murasaki

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Download murasaki

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha (unofficial port) 1.68.6-6+b5 492.5 kB3,574.0 kB [list of files]
amd64 1.68.6-6+b5 483.0 kB3,027.0 kB [list of files]
arm64 1.68.6-6+b5 448.3 kB3,035.0 kB [list of files]
armel 1.68.6-6+b5 374.0 kB2,585.0 kB [list of files]
armhf 1.68.6-6+b5 378.2 kB1,937.0 kB [list of files]
hppa (unofficial port) 1.68.6-6+b5 479.7 kB3,180.0 kB [list of files]
hurd-i386 1.68.6-6+b5 490.8 kB2,993.0 kB [list of files]
i386 1.68.6-6+b5 494.8 kB3,005.0 kB [list of files]
kfreebsd-amd64 1.68.6-6+b5 475.7 kB3,007.0 kB [list of files]
kfreebsd-i386 1.68.6-6+b5 490.8 kB2,993.0 kB [list of files]
m68k (unofficial port) 1.68.6-6+b4 380.8 kB2,565.0 kB [list of files]
mips 1.68.6-6+b5 456.8 kB3,597.0 kB [list of files]
mips64el 1.68.6-6+b5 476.4 kB3,945.0 kB [list of files]
mipsel 1.68.6-6+b5 471.5 kB3,597.0 kB [list of files]
powerpc 1.68.6-6+b5 446.3 kB3,774.0 kB [list of files]
powerpcspe (unofficial port) 1.68.6-6+b5 424.3 kB3,395.0 kB [list of files]
ppc64 (unofficial port) 1.68.6-6+b5 486.3 kB4,427.0 kB [list of files]
ppc64el 1.68.6-6+b5 488.4 kB4,107.0 kB [list of files]
s390x 1.68.6-6+b5 441.1 kB3,383.0 kB [list of files]
sh4 (unofficial port) 1.68.6-6+b4 424.9 kB2,527.0 kB [list of files]
sparc64 (unofficial port) 1.68.6-6+b6 409.5 kB3,102.0 kB [list of files]
x32 (unofficial port) 1.68.6-6+b5 461.4 kB2,741.0 kB [list of files]