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[ Source: abpoa  ]

Package: abpoa (1.4.1-3)

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adaptive banded Partial Order Alignment

abPOA is an extended version of Partial Order Alignment (POA) that performs adaptive banded dynamic programming (DP) with an SIMD implementation. abPOA can perform multiple sequence alignment (MSA) on a set of input sequences and generate a consensus sequence by applying the heaviest bundling algorithm to the final alignment graph.

abPOA can generate high-quality consensus sequences from error-prone long reads and offer significant speed improvement over existing tools.

abPOA supports three alignment modes (global, local, extension) and flexible scoring schemes that allow linear, affine and convex gap penalties. It right now supports SSE2/SSE4.1/AVX2 vectorization.

For more information please refer to the paper[1] published in Bioinformatics.


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Download abpoa

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 257.1 kB1,547.0 kB [list of files]
arm64 93.7 kB314.0 kB [list of files]
ppc64el 116.0 kB378.0 kB [list of files]