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[ Source: cufflinks  ]

Пакунок: cufflinks (1.3.0-2) [non-free]

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Transcript assembly, differential expression and regulation for RNA-Seq

Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles the alignments into a parsimonious set of transcripts. Cufflinks then estimates the relative abundances of these transcripts based on how many reads support each one.

Tags: Field: Biology, Implemented in: C, implemented-in::c++, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, works-with::biological-sequence

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