Пакунок: r-bioc-ioniser (2.26.0+dfsg-1)

[ Source: r-bioc-ioniser  ]

Quality Assessment Tools for Oxford Nanopore MinION data

IONiseR provides tools for the quality assessment of Oxford Nanopore MinION data. It extracts summary statistics from a set of fast5 files and can be used either before or after base calling. In addition to standard summaries of the read-types produced, it provides a number of plots for visualising metrics relative to experiment run time or spatially over the surface of a flowcell.

Інші пакунки пов'язані з r-bioc-ioniser

• dep: r-api-4.0

  virtual package provided by r-base-core

• dep: r-api-bioc-3.18

  virtual package provided by r-bioc-biocgenerics

• dep: r-bioc-biocgenerics

  generic functions for Bioconductor

• dep: r-bioc-biocparallel

  BioConductor facilities for parallel evaluation

• dep: r-bioc-biostrings

  GNU R string objects representing biological sequences

• dep: r-bioc-rhdf5

  BioConductor HDF5 interface to R

• dep: r-bioc-shortread

  GNU R classes and methods for high-throughput short-read sequencing data

• dep: r-bioc-xvector

  BioConductor representation and manpulation of external sequences

• dep: r-cran-bit64

  GNU R S3 Class for Vectors of 64bit Integers

• dep: r-cran-dplyr

  GNU R grammar of data manipulation

• dep: r-cran-ggplot2

  implementation of the Grammar of Graphics

• dep: r-cran-magrittr

  GNU R forward-pipe operator

• dep: r-cran-stringr

  Make it easier to work with strings

• dep: r-cran-tibble

  GNU R Simple Data Frames

• dep: r-cran-tidyr

  GNU R package to easily tidy data

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-cran-gridextra

  GNU R package with extensions for the grid package

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

• sug: r-cran-testthat

  GNU R testsuite

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