Пакунок: r-bioc-phyloseq (1.26.1+dfsg-1)

[ Source: r-bioc-phyloseq  ]

GNU R handling and analysis of high-throughput microbiome census data

The Bioconductor module phyloseq provides a set of classes and tools to facilitate the import, storage, analysis, and graphical display of microbiome census data.

Інші пакунки пов'язані з r-bioc-phyloseq

• dep: r-api-3.5

  virtual package provided by r-base-core

• dep: r-api-bioc-3.8

  virtual package provided by r-bioc-biocgenerics

• dep: r-base-core (>= 3.5.2-1)

  GNU R core of statistical computation and graphics system

• dep: r-bioc-biobase (>= 2.36.2)

  base functions for Bioconductor

• dep: r-bioc-biocgenerics (>= 0.22.0)

  generic functions for Bioconductor

• dep: r-bioc-biomformat (>= 1.0.0)

  GNU R interface package for the BIOM file format

• dep: r-bioc-biostrings (>= 2.40.0)

  GNU R string objects representing biological sequences

• dep: r-bioc-multtest (>= 2.28.0)

  Bioconductor resampling-based multiple hypothesis testing

• dep: r-cran-ade4 (>= 1.7-4)

  GNU R analysis of ecological data

• dep: r-cran-ape (>= 5.0)

  GNU R package for Analyses of Phylogenetics and Evolution

• dep: r-cran-cluster (>= 2.0.4)

  GNU R package for cluster analysis by Rousseeuw et al

• dep: r-cran-data.table (>= 1.10.4)

  GNU R extension of Data.frame

• dep: r-cran-foreach (>= 1.4.3)

  GNU R foreach looping support

• dep: r-cran-ggplot2 (>= 2.1.0)

  implementation of the Grammar of Graphics

• dep: r-cran-igraph (>= 1.0.1)

  GNU R network analysis and visualization

• dep: r-cran-plyr (>= 1.8.3)

  tools for splitting, applying and combining data

• dep: r-cran-reshape2 (>= 1.4.1)

  Flexibly reshape data: a reboot of the reshape package

• dep: r-cran-scales (>= 0.4.0)

  Scale functions for visualization

• dep: r-cran-vegan (>= 2.5)

  Community Ecology Package for R

• rec: r-cran-testthat (>= 1.0.2)

  GNU R testsuite

• sug: r-bioc-deseq2 (>= 1.16.1)

  R package for RNA-Seq Differential Expression Analysis

• sug: r-bioc-genefilter (>= 1.58)

  methods for filtering genes from microarray experiments

• sug: r-bioc-metagenomeseq (>= 1.14)

  GNU R statistical analysis for sparse high-throughput sequencing

• sug: r-cran-knitr (>= 1.16)

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-rmarkdown (>= 1.6)

  convert R markdown documents into a variety of formats

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