Пакунок: r-cran-surveillance (1.16.2-1)

[ Source: r-cran-surveillance  ]

GNU R package for the Modeling and Monitoring of Epidemic Phenomena

Implementation of statistical methods for the modeling and change-point detection in time series of counts, proportions and categorical data, as well as for the modeling of continuous-time epidemic phenomena, e.g., discrete-space setups such as the spatially enriched Susceptible-Exposed-Infectious-Recovered (SEIR) models, or continuous-space point process data such as the occurrence of infectious diseases. Main focus is on outbreak detection in count data time series originating from public health surveillance of communicable diseases, but applications could just as well originate from environmetrics, reliability engineering, econometrics or social sciences.

Currently, the package contains implementations of many typical outbreak detection procedures such as Farrington et al (1996), Noufaily et al (2012) or the negative binomial LR-CUSUM method described in Höhle and Paul (2008). A novel CUSUM approach combining logistic and multinomial logistic modelling is also included. Furthermore, inference methods for the retrospective infectious disease models in Held et al (2005), Held et al (2006), Paul et al (2008), Paul and Held (2011), Held and Paul (2012), and Meyer and Held (2014) are provided.

Continuous self-exciting spatio-temporal point processes are modeled through additive-multiplicative conditional intensities as described in Höhle (2009) ('twinSIR', discrete space) and Meyer et al (2012) ('twinstim', continuous space).

The package contains several real-world data sets, the ability to simulate outbreak data, visualize the results of the monitoring in temporal, spatial or spatio-temporal fashion.

Note: Using the 'boda' algorithm requires the 'INLA' package, which is available from <http://www.r-inla.org/download>.

Tags: Field: Medicine, Implemented in: GNU R, User Interface: interface::commandline, role::program

Інші пакунки пов'язані з r-cran-surveillance

• dep: libc6 (>= 2.14) [amd64]

  Бібліотека GNU C: спільні бібліотеки
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.17) [arm64]

  dep: libc6 (>= 2.4) [armhf, i386]

• dep: libgcc1 (>= 1:3.0) [not armhf]

  Допоміжна бібліотека GCC

  dep: libgcc1 (>= 1:3.5) [armhf]

• dep: libstdc++6 (>= 5.2)

  Стандартна бібліотека C++ GNU, версії 3

• dep: r-api-3.5

  virtual package provided by r-base-core

• dep: r-base-core (>= 3.5.1-1)

  GNU R core of statistical computation and graphics system

• dep: r-cran-mass

  GNU R package of Venables and Ripley's MASS

• dep: r-cran-matrix

  GNU R package of classes for dense and sparse matrices

• dep: r-cran-nlme

  GNU R package for (non-)linear mixed effects models

• dep: r-cran-polycub (>= 0.6.0)

  GNU R Cubature over Polygonal Domains

• dep: r-cran-rcpp (>= 0.11.1)

  GNU R package for Seamless R and C++ Integration

• dep: r-cran-sp (>= 1.0-15)

  GNU R classes and methods for spatial data

• dep: r-cran-spatstat (>= 1.36-0)

  GNU R Spatial Point Pattern analysis, model-fitting, simulation, tests

• dep: r-cran-xtable (>= 1.7-0)

  GNU R coerce data to LaTeX and HTML tables

• rec: r-cran-maxlik

  GNU R maximum likelihood estimation

• rec: r-cran-memoise

  Memoise functions

• rec: r-cran-spdep

  GNU R spatial dependence: weighting schemes, statistics and models

• rec: r-cran-testthat (>= 0.10.0)

  GNU R testsuite

• sug: r-cran-animation

  GNU R gallery of animations and utilities to create animations

• sug: r-cran-coda

  Output analysis and diagnostics for MCMC simulations in R

• sug: r-cran-colorspace

  GNU R Color Space Manipulation

• sug: r-cran-ggplot2

  implementation of the Grammar of Graphics

• sug: r-cran-gridextra (>= 2.0.0)

  GNU R package with extensions for the grid package

• sug: r-cran-gsl

  GNU R wrapper for the GNU Scientific Library

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-lattice

  GNU R package for 'Trellis' graphics

• sug: r-cran-maptools

  GNU R Tools for reading and handling spatial objects

• sug: r-cran-msm

  GNU R Multi-state Markov and hidden Markov models in continuous time

• sug: r-cran-numderiv

  GNU R package for accurate numerical derivatives

• sug: r-cran-polyclip

  GNU R Polygon Clipping

• sug: r-cran-quadprog

  GNU R package for solving quadratic programming problems

• sug: r-cran-scales

  Scale functions for visualization

• sug: r-cran-spc

  GNU R Statistical Process Control

• sug: r-cran-testthat (>= 0.11.0)

  GNU R testsuite

• sug: r-cran-xts

  GNU R package for time series analysis -- xts

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Архітектура	Розмір пакунка	Розмір після встановлення	Файли
amd64	5,612.1 kB	6,937.0 kB	[список файлів]
arm64	5,600.6 kB	6,913.0 kB	[список файлів]
armhf	5,598.1 kB	6,868.0 kB	[список файлів]
i386	5,624.5 kB	6,951.0 kB	[список файлів]