[ Source: vcfanno ]
Пакунок: vcfanno (0.3.2+ds-2 and others)
Links for vcfanno
Debian Resources:
Download Source Package vcfanno:
Maintainers:
External Resources:
- Homepage [github.com]
Similar packages:
annotate a VCF with other VCFs/BEDs/tabixed files
Vcfanno allows you to quickly annotate your VCF with any number of INFO fields from any number of VCFs or BED files. It uses a simple conf file to allow the user to specify the source annotation files and fields and how they will be added to the info of the query VCF.
* For VCF, values are pulled by name from the INFO field with special
cases of ID and FILTER to pull from those VCF columns.
* For BED, values are pulled from (1-based) column number.
* For BAM, depth (count), "mapq" and "seq" are currently supported.
Vcfanno is written in go and it supports custom user-scripts written in Lua. It can annotate more than 8000 variants per second with 34 annotations from 9 files on a modest laptop and over 30K variants per second using 12 processes on a server.
Інші пакунки пов'язані з vcfanno
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- dep: libc6 (>= 2.17) [arm64, ppc64el]
- Бібліотека GNU C: спільні бібліотеки
also a virtual package provided by libc6-udeb
- dep: libc6 (>= 2.3.6-6~) [i386]
- dep: libc6 (>= 2.4) [not arm64, i386, ppc64el]
Завантажити vcfanno
| Архітектура | Версія | Розмір пакунка | Розмір після встановлення | Файли |
|---|---|---|---|---|
| amd64 | 0.3.2+ds-2+b6 | 2,103.4 kB | 6,786.0 kB | [список файлів] |
| arm64 | 0.3.2+ds-2+b6 | 1,785.3 kB | 6,321.0 kB | [список файлів] |
| armel | 0.3.2+ds-2+b6 | 1,821.7 kB | 5,766.0 kB | [список файлів] |
| armhf | 0.3.2+ds-2+b6 | 1,814.7 kB | 5,766.0 kB | [список файлів] |
| i386 | 0.3.2+ds-2+b6 | 1,980.7 kB | 5,764.0 kB | [список файлів] |
| mips64el | 0.3.2+ds-2+b6 | 1,671.5 kB | 6,915.0 kB | [список файлів] |
| mipsel | 0.3.2+ds-2+b6 | 1,695.4 kB | 6,442.0 kB | [список файлів] |
| ppc64el | 0.3.2+ds-2+b6 | 1,746.0 kB | 6,321.0 kB | [список файлів] |
| s390x | 0.3.2+ds-2+b6 | 1,922.7 kB | 6,708.0 kB | [список файлів] |