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[ Kaynak: freecontact  ]

Paket: libfreecontact-dev (1.0.21-5)

libfreecontact-dev için bağlantılar

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freecontact Kaynak Paketini İndir:

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Benzer paketler:

fast protein contact predictor library - development files

FreeContact is a protein residue contact predictor optimized for speed. Its input is a multiple sequence alignment. FreeContact can function as an accelerated drop-in for the published contact predictors EVfold-mfDCA of DS. Marks (2011) and PSICOV of D. Jones (2011).

FreeContact is accelerated by a combination of vector instructions, multiple threads, and faster implementation of key parts. Depending on the alignment, 8-fold or higher speedups are possible.

A sufficiently large alignment is required for meaningful results. As a minimum, an alignment with an effective (after-weighting) sequence count bigger than the length of the query sequence should be used. Alignments with tens of thousands of (effective) sequences are considered good input.

jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite can be used to generate the alignments, for example.

This package contains files necessary for developing applications with libfreecontact.

Etiketler: Yazılım Geliştirme: Kitaplıklar, Rol: Geliştirme Kitaplığı

libfreecontact-dev sağlayan paketler

libfreecontact-dev
fast protein contact predictor library - development files

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Tüm mevcut mimariler için indir
Mimari Paket Boyutu Kurulu Boyut Dosyalar
amd64 76,8 kB346,0 kB [dosya listesi]
arm64 72,2 kB333,0 kB [dosya listesi]
armel 70,9 kB331,0 kB [dosya listesi]
armhf 69,1 kB289,0 kB [dosya listesi]
i386 68,7 kB275,0 kB [dosya listesi]
mips 75,6 kB302,0 kB [dosya listesi]
mips64el 78,6 kB397,0 kB [dosya listesi]
mipsel 77,3 kB303,0 kB [dosya listesi]
ppc64el 80,9 kB363,0 kB [dosya listesi]
s390x 71,6 kB365,0 kB [dosya listesi]