Paket: spaln (3.0.2+dfsg-2 ve diğerleri)

[ Kaynak: spaln  ]

splicing-aware transcript-alignment to genomic DNA

Spaln (space-efficient spliced alignment) is a stand-alone program that maps and aligns a set of cDNA or protein sequences onto a whole genomic sequence in a single job. It also performs spliced or ordinary alignment after rapid similarity search against a protein sequence database, if a genomic segment or an amino acid sequence is given as a query.

spaln supports a combination of protein sequence database and a given genomic segment and performs rapid similarity searches and (semi-)global alignments of a set of protein sequence queries against a protein sequence database. Spaln adopts multi-phase heuristics that makes it possible to perform the job on a conventional personal computer.

spaln ile İlgili Diğer Paketler

• dep: libc6 (>= 2.33) [hppa, m68k, sh4, x32]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

  dep: libc6 (>= 2.34) [alpha, hppa, ia64, m68k, sh4, x32 değil]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgcc-s1 (>= 3.0) [riscv64]

  GCC support library

  dep: libgcc-s1 (>= 3.3.1) [hppa, ia64, m68k, riscv64, sh4 değil]

  dep: libgcc-s1 (>= 3.3.4) [sh4]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support library

• dep: libgsl27 (>= 2.7.1) [hppa, m68k, sh4, x32 değil]

  GNU Scientific Library (GSL) -- library package

• dep: libgslcblas0 (>= 2.7.1) [sparc64]

  GNU Scientific Library (GSL) -- blas library package

• dep: libstdc++6 (>= 5)

  GNU Standard C++ Library v3

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: spaln-data

  splicing-aware transcript-alignment to genomic DNA (data)

• dep: zlib1g (>= 1:1.2.0.2)

  compression library - runtime

spaln indir

Tüm mevcut mimariler için indir

Mimari	Sürüm	Paket Boyutu	Kurulu Boyut	Dosyalar
alpha (resmi olmayan port)	3.0.2+dfsg-2	527,4 kB	2.362,0 kB	[dosya listesi]
amd64	3.0.2+dfsg-2	550,0 kB	1.901,0 kB	[dosya listesi]
arm64	3.0.2+dfsg-2	492,8 kB	2.230,0 kB	[dosya listesi]
hppa (resmi olmayan port)	2.4.7+dfsg-1	330,7 kB	799,0 kB	[dosya listesi]
ia64 (resmi olmayan port)	3.0.2+dfsg-2	679,9 kB	3.602,0 kB	[dosya listesi]
m68k (resmi olmayan port)	2.4.7+dfsg-1	306,2 kB	811,0 kB	[dosya listesi]
mips64el	3.0.2+dfsg-2	529,1 kB	2.342,0 kB	[dosya listesi]
ppc64 (resmi olmayan port)	3.0.2+dfsg-2	555,4 kB	2.690,0 kB	[dosya listesi]
ppc64el	3.0.2+dfsg-2	561,4 kB	2.615,0 kB	[dosya listesi]
riscv64	3.0.2+dfsg-2	652,4 kB	3.349,0 kB	[dosya listesi]
s390x	3.0.2+dfsg-2	567,8 kB	2.024,0 kB	[dosya listesi]
sh4 (resmi olmayan port)	2.4.7+dfsg-1	373,7 kB	713,0 kB	[dosya listesi]
sparc64 (resmi olmayan port)	3.0.2+dfsg-2	502,1 kB	14.483,0 kB	[dosya listesi]
x32 (resmi olmayan port)	2.4.7+dfsg-1	337,2 kB	813,0 kB	[dosya listesi]