Paket: fastahack (1.0.0+dfsg-11 ve diğerleri)

[ Kaynak: libfastahack  ]

utility for indexing and sequence extraction from FASTA files

fastahack is a small application for indexing and extracting sequences and subsequences from FASTA files. The included Fasta.cpp library provides a FASTA reader and indexer that can be embedded into applications which would benefit from directly reading subsequences from FASTA files. The library automatically handles index file generation and use.

Features:

 * FASTA index (.fai) generation for FASTA files
 * Sequence extraction
 * Subsequence extraction
 * Sequence statistics (currently only entropy is provided)

Sequence and subsequence extraction use fseek64 to provide fastest-possible extraction without RAM-intensive file loading operations. This makes fastahack a useful tool for bioinformaticists who need to quickly extract many subsequences from a reference FASTA sequence.

fastahack ile İlgili Diğer Paketler

• dep: libc6 (>= 2.34) [alpha, ia64, sh4 değil]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libdisorder0 (>= 0.0.2)

  library for entropy measurement of byte streams

• dep: libfastahack0 (>= 0.0+git20160702.bbc645f) [amd64, arm64, ia64, mips64el, ppc64el, sparc64]

  library for indexing and sequence extraction from FASTA files (lib)

  dep: libfastahack0 (>= 1.0.0+dfsg) [amd64, arm64, ia64, mips64el, ppc64el, sparc64 değil]

• dep: libgcc-s1 (>= 3.0) [armel, armhf, hppa, ia64, m68k değil]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support library

• dep: libstdc++6 (>= 13.1)

  GNU Standard C++ Library v3

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

fastahack indir

Tüm mevcut mimariler için indir

Mimari	Sürüm	Paket Boyutu	Kurulu Boyut	Dosyalar
alpha (resmi olmayan port)	1.0.0+dfsg-11	11,7 kB	84,0 kB	[dosya listesi]
amd64	1.0.0+dfsg-11+b1	12,3 kB	41,0 kB	[dosya listesi]
arm64	1.0.0+dfsg-11+b1	11,8 kB	85,0 kB	[dosya listesi]
armel	1.0.0+dfsg-11+b1	11,7 kB	36,0 kB	[dosya listesi]
armhf	1.0.0+dfsg-11+b1	11,6 kB	36,0 kB	[dosya listesi]
hppa (resmi olmayan port)	1.0.0+dfsg-11	11,9 kB	36,0 kB	[dosya listesi]
i386	1.0.0+dfsg-11+b1	12,5 kB	44,0 kB	[dosya listesi]
ia64 (resmi olmayan port)	1.0.0+dfsg-11	13,3 kB	49,0 kB	[dosya listesi]
m68k (resmi olmayan port)	1.0.0+dfsg-11	11,9 kB	43,0 kB	[dosya listesi]
mips64el	1.0.0+dfsg-11+b1	12,1 kB	86,0 kB	[dosya listesi]
ppc64 (resmi olmayan port)	1.0.0+dfsg-11	12,1 kB	84,0 kB	[dosya listesi]
ppc64el	1.0.0+dfsg-11+b1	12,3 kB	85,0 kB	[dosya listesi]
riscv64	1.0.0+dfsg-11+b1	11,7 kB	37,0 kB	[dosya listesi]
s390x	1.0.0+dfsg-11+b1	12,2 kB	41,0 kB	[dosya listesi]
sh4 (resmi olmayan port)	1.0.0+dfsg-11	12,5 kB	83,0 kB	[dosya listesi]
sparc64 (resmi olmayan port)	1.0.0+dfsg-11	11,5 kB	1.045,0 kB	[dosya listesi]
x32 (resmi olmayan port)	1.0.0+dfsg-11	12,0 kB	39,0 kB	[dosya listesi]